1) Message boards : Server and website : Upload Problems (Message 37680)
Posted 4 days ago by Profile nate
There is now plenty of space on the server so no one should be having upload/download problems. Of course, please let us know if any of you still has problems. We still have work to do to ensure this doesn't happen again, but that's for us to worry about.
2) Message boards : Number crunching : All WUs suddenly failing - output file absent (Message 37018)
Posted 77 days ago by Profile nate
FYI http://www.gpugrid.net/forum_thread.php?id=3770&nowrap=true#37017
3) Message boards : Number crunching : NOELIA WU (Message 37017)
Posted 77 days ago by Profile nate
Hello all.

The NOELIA_SH2eq workunits were all failing, so those have been cancelled.

There some other groups that follow the naming pattern NOELIA_TRPXXX. Those continue to run, because from what I can tell the ones that are being sent out now do not have a problem. The first post in this thread (http://www.gpugrid.net/forum_thread.php?id=3770&nowrap=true#36977) refers to a group that was cancelled, fixed and resent earlier in the week. However, if you continue to have problems with those please let me know here.

Nate
4) Message boards : Number crunching : CPU work units (Message 37007)
Posted 78 days ago by Profile nate
I believe there are some on the way right now. Stay tuned!
5) Message boards : Number crunching : NOELIA WU (Message 37006)
Posted 78 days ago by Profile nate
Hey guys,

We're looking into it. Unfortunately Noelia is away right now so we may have to cancel them for now. Thanks for catching it and pointing it out.

Nate
6) Message boards : News : WU: CMYBKIX (Message 36975)
Posted 83 days ago by Profile nate
Hi all,

I have submitted a bunch of new workunits to the short queue. This should fix the dry spell we have had there for the past week.

The workunits are named "NATHAN_CMYBKIX". In these simulations I am investigating the binding of a small disodered protein named cMyb to another protein named KIX. Disordered proteins and disordered domains (as opposed to nicely structured ones like hemoglobin) are very important in protein-protein interactions. Mutations in disordered proteins are very common in cancers, amyloid fibril diseases like alzheimer's and parkinson's, and probably a lot of other disease we don't know about. So, with these simulations we will be taking some first steps towards understanding some key things about these types of interactions. Lessons we learn from this system should help us work on many, many others.

Nate
7) Message boards : Server and website : No cpu tasks? (Message 35906)
Posted 149 days ago by Profile nate
Strange. We have a lot of workunits in the line-up, so there shouldn't be an issue. We'll look into it.
8) Message boards : News : WU: CMYB_equil (Message 35905)
Posted 149 days ago by Profile nate
Those were the corrected ones. There is currently a CMYB_equil3 batch as well, that also seems to be going without problems. These simulations are part of a much bigger batch that will come soon.
9) Message boards : News : WU: CMYB_equil (Message 35853)
Posted 152 days ago by Profile nate
And indeed there was a problem, so I have stopped them and I will resend them corrected. Sorry about that. For some reason checks before submission did not flag the problem. Very frustrating.
10) Message boards : News : WU: CMYB_equil (Message 35850)
Posted 152 days ago by Profile nate
Hello all,

I have submitted some simulations of a small peptide to the short queue. This is a special type of simulation, and it is also the first time I am running them, so there may be errors with them. Please let us know what you see. There should be pass through quickly, however, so hopefully they don't cause too many problems.

Nate


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