Task 38645108
| Name | shp2_A07_A06_r0_2-QUICO_ATM_OpenFF23_NAGL_shp2-0-6-RND9135_7 |
| Workunit | 31589615 |
| Created | 12 May 2026, 20:55:31 UTC |
| Sent | 12 May 2026, 20:55:34 UTC |
| Report deadline | 17 May 2026, 20:55:34 UTC |
| Received | 12 May 2026, 21:11:27 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
| Computer ID | 609406 |
| Run time | 13 min 9 sec |
| CPU time | 11 min 6 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 5,075.73 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 781.49 MB |
| Peak swap size | 9.83 GB |
| Peak disk usage | 2.81 GB |
Stderr output
<core_client_version>8.2.8</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
(0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
13:57:22 (34320): wrapper (7.9.26016): starting
13:57:22 (34320): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A07_A06_0.pdb
QB_A07_A06_0.xml
QB_A07_A06.inpcrd
QB_A07_A06_input.yaml
QB_A07_A06.pdb
QB_A07_A06.prmtop
QB_A07_A06_sys.xml
run.bat
run.sh
13:57:25 (34320): Library/usr/bin/tar.exe exited; CPU time 0.031250
13:57:25 (34320): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\29\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\29\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "C:\ProgramData\BOINC\slots\29\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
File "C:\ProgramData\BOINC\slots\29\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
rx.scheduleJobs()
File "C:\ProgramData\BOINC\slots\29\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
self.transport.ProcessJobQueue(min_time,cycle_time)
File "C:\ProgramData\BOINC\slots\29\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
self.isDone(repl,0)
File "C:\ProgramData\BOINC\slots\29\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
retcode = self._update_replica(job)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\29\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 212, in _update_replica
pot = job['openmm_worker'].get_energy()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\29\Lib\site-packages\atom_openmm\ommworker.py", line 451, in get_energy
return self._worker_getenergy()
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\29\Lib\site-packages\atom_openmm\ommworker.py", line 400, in _worker_getenergy
state = self.simulation.context.getState(getEnergy = True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\29\Lib\site-packages\openmm\openmm.py", line 5022, in getState
state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Particle coordinate is NaN. For more information, see https://github.com/openmm/openmm/wiki/Frequently-Asked-Questions#nan
14:09:13 (34320): C:/Windows/system32/cmd.exe exited; CPU time 666.843750
14:09:13 (34320): app exit status: 0x16
14:09:13 (34320): called boinc_finish(195)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 14887427 bytes.
Dumping objects ->
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{3835180} normal block at 0x00000203C45A4C40, 48 bytes long.
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{3835169} normal block at 0x00000203C45A49A0, 48 bytes long.
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{3835158} normal block at 0x00000203C45A4930, 48 bytes long.
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{3835116} normal block at 0x00000203C62F8080, 64 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
..\api\boinc_api.cpp(309) : {3835103} normal block at 0x00000203C459DE80, 8 bytes long.
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Data: <PÖXÄ > 50 D6 58 C4 03 02 00 00
..\zip\boinc_zip.cpp(122) : {308} normal block at 0x00000203C45911C0, 260 bytes long.
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{274} normal block at 0x00000203C45A5B80, 16 bytes long.
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{256} normal block at 0x00000203C45A1240, 32 bytes long.
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{89} normal block at 0x00000203C459D8E0, 16 bytes long.
Data: < íXÄ > 20 ED 58 C4 03 02 00 00 00 00 00 00 00 00 00 00
{88} normal block at 0x00000203C458ED20, 40 bytes long.
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{67} normal block at 0x00000203C459DD90, 16 bytes long.
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{66} normal block at 0x00000203C459DDE0, 16 bytes long.
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{64} normal block at 0x00000203C459D840, 16 bytes long.
Data: <ØWß6÷ > D8 57 DF 36 F7 7F 00 00 00 00 00 00 00 00 00 00
{63} normal block at 0x00000203C459D750, 16 bytes long.
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{62} normal block at 0x00000203C459DE30, 16 bytes long.
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{61} normal block at 0x00000203C459DBB0, 16 bytes long.
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{60} normal block at 0x00000203C459DB60, 16 bytes long.
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{59} normal block at 0x00000203C459DB10, 16 bytes long.
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{58} normal block at 0x00000203C459D700, 16 bytes long.
Data: < ÀÝ6÷ > 18 C0 DD 36 F7 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
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