Task 38644828

Name p38_3_A04_A08_r0_4-QUICO_ATM_OpenFF_NAGL_p38_3-5-6-RND4450_1
Workunit 31590120
Created 9 May 2026, 22:15:59 UTC
Sent 9 May 2026, 22:16:00 UTC
Report deadline 14 May 2026, 22:16:00 UTC
Received 10 May 2026, 2:32:12 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 613630
Run time 3 hours 45 min 53 sec
CPU time 3 hours 19 min 26 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 53,036.10 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 727.91 MB
Peak swap size 7.26 GB
Peak disk usage 3.08 GB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
15:46:34 (9096): wrapper (7.9.26016): starting
15:46:34 (9096): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A04_A08_0.pdb
QB_A04_A08_0.xml
QB_A04_A08.inpcrd
QB_A04_A08_input.yaml
QB_A04_A08.pdb
QB_A04_A08.prmtop
QB_A04_A08_sys.xml
run.bat
run.sh
15:46:36 (9096): Library/usr/bin/tar.exe exited; CPU time 0.000000
15:46:36 (9096): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
19:31:34 (9096): C:/Windows/system32/cmd.exe exited; CPU time 11966.203125
19:31:34 (9096): called boinc_finish(0)
0 bytes in 0 Free Blocks.
566 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 175304479 bytes.
Dumping objects ->
{3835649} normal block at 0x000002252B599180, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835638} normal block at 0x000002252B598C40, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835627} normal block at 0x000002252B598E00, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835616} normal block at 0x000002252B598E70, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835605} normal block at 0x00000225298E62F0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835574} normal block at 0x000002252B53A760, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835563} normal block at 0x000002252990E910, 155 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835560} normal block at 0x00000225298DEE10, 8 bytes long.
 Data: <  &#213;)%   > 00 00 D5 29 25 02 00 00 
{3834734} normal block at 0x000002252990EC90, 155 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833963} normal block at 0x00000225298DFB30, 8 bytes long.
 Data: < &#154;\+%   > 10 9A 5C 2B 25 02 00 00 
..\zip\boinc_zip.cpp(122) : {313} normal block at 0x00000225298DCE00, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x00000225298D5DA0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{297} normal block at 0x00000225298EB400, 16 bytes long.
 Data: <(&#185;&#142;)%           > 28 B9 8E 29 25 02 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x00000225298EB270, 16 bytes long.
 Data: < &#185;&#142;)%           > 00 B9 8E 29 25 02 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x00000225298E5580, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{294} normal block at 0x00000225298EA6E0, 16 bytes long.
 Data: <&#216;&#184;&#142;)%           > D8 B8 8E 29 25 02 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x00000225298EA690, 16 bytes long.
 Data: <&#176;&#184;&#142;)%           > B0 B8 8E 29 25 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x00000225298EB220, 16 bytes long.
 Data: < &#184;&#142;)%           > 88 B8 8E 29 25 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x00000225298EB090, 16 bytes long.
 Data: <`&#184;&#142;)%           > 60 B8 8E 29 25 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x00000225298E6130, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{289} normal block at 0x00000225298EAB90, 16 bytes long.
 Data: < &#235;&#140;)%           > 88 EB 8C 29 25 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x00000225298E4980, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{287} normal block at 0x00000225298EB1D0, 16 bytes long.
 Data: <`&#235;&#140;)%           > 60 EB 8C 29 25 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x00000225298EAFA0, 16 bytes long.
 Data: <8&#235;&#140;)%           > 38 EB 8C 29 25 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x00000225298EB180, 16 bytes long.
 Data: < &#235;&#140;)%           > 10 EB 8C 29 25 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x00000225298EB0E0, 16 bytes long.
 Data: <&#232;&#234;&#140;)%           > E8 EA 8C 29 25 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x00000225298EA870, 16 bytes long.
 Data: <&#192;&#234;&#140;)%           > C0 EA 8C 29 25 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x00000225298EAB40, 16 bytes long.
 Data: < &#234;&#140;)%           > 98 EA 8C 29 25 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x00000225298E4E00, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{279} normal block at 0x00000225298EB2C0, 16 bytes long.
 Data: <p&#234;&#140;)%           > 70 EA 8C 29 25 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x00000225298CEA70, 320 bytes long.
 Data: <&#192;&#178;&#142;)%    N&#142;)%   > C0 B2 8E 29 25 02 00 00 00 4E 8E 29 25 02 00 00 
{277} normal block at 0x00000225298EB130, 16 bytes long.
 Data: <@&#184;&#142;)%           > 40 B8 8E 29 25 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x00000225298EAF50, 16 bytes long.
 Data: < &#184;&#142;)%           > 18 B8 8E 29 25 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x00000225298E4860, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{274} normal block at 0x00000225298EA960, 16 bytes long.
 Data: <&#240;&#183;&#142;)%           > F0 B7 8E 29 25 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x00000225298E4EC0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{272} normal block at 0x00000225298EB310, 16 bytes long.
 Data: <8&#183;&#142;)%           > 38 B7 8E 29 25 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x00000225298EAF00, 16 bytes long.
 Data: < &#183;&#142;)%           > 10 B7 8E 29 25 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x00000225298EB3B0, 16 bytes long.
 Data: <&#232;&#182;&#142;)%           > E8 B6 8E 29 25 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x00000225298EB360, 16 bytes long.
 Data: <&#192;&#182;&#142;)%           > C0 B6 8E 29 25 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x00000225298EAE60, 16 bytes long.
 Data: < &#182;&#142;)%           > 98 B6 8E 29 25 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x00000225298EAE10, 16 bytes long.
 Data: <p&#182;&#142;)%           > 70 B6 8E 29 25 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x00000225298EAD20, 16 bytes long.
 Data: <&#208;c&#142;)%           > D0 63 8E 29 25 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x00000225298E63D0, 40 bytes long.
 Data: < &#173;&#142;)%   `&#167;S+%   > 20 AD 8E 29 25 02 00 00 60 A7 53 2B 25 02 00 00 
{263} normal block at 0x00000225298EACD0, 16 bytes long.
 Data: <P&#182;&#142;)%           > 50 B6 8E 29 25 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x00000225298EA730, 16 bytes long.
 Data: <(&#182;&#142;)%           > 28 B6 8E 29 25 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x00000225298E47A0, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{260} normal block at 0x00000225298EA640, 16 bytes long.
 Data: < &#182;&#142;)%           > 00 B6 8E 29 25 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x00000225298EB600, 992 bytes long.
 Data: <@&#166;&#142;)%   &#160;G&#142;)%   > 40 A6 8E 29 25 02 00 00 A0 47 8E 29 25 02 00 00 
{95} normal block at 0x00000225298E4BC0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{94} normal block at 0x00000225298DEF00, 16 bytes long.
 Data: <@d&#142;)%           > 40 64 8E 29 25 02 00 00 00 00 00 00 00 00 00 00 
{93} normal block at 0x00000225298E6440, 40 bytes long.
 Data: < &#239; )%   &#192;K&#142;)%   > 00 EF 8D 29 25 02 00 00 C0 4B 8E 29 25 02 00 00 
{72} normal block at 0x00000225298DF310, 16 bytes long.
 Data: < &#234;);&#247;           > 80 EA 29 3B F7 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x00000225298DF180, 16 bytes long.
 Data: <@&#233;);&#247;           > 40 E9 29 3B F7 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x00000225298DF860, 16 bytes long.
 Data: <&#248;W&;&#247;           > F8 57 26 3B F7 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x00000225298DF770, 16 bytes long.
 Data: <&#216;W&;&#247;           > D8 57 26 3B F7 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x00000225298DF4F0, 16 bytes long.
 Data: <P &;&#247;           > 50 04 26 3B F7 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x00000225298DEFA0, 16 bytes long.
 Data: <0 &;&#247;           > 30 04 26 3B F7 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x00000225298DFBD0, 16 bytes long.
 Data: <&#224; &;&#247;           > E0 02 26 3B F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x00000225298DF2C0, 16 bytes long.
 Data: <  &;&#247;           > 10 04 26 3B F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x00000225298DF540, 16 bytes long.
 Data: <p &;&#247;           > 70 04 26 3B F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x00000225298DEDC0, 16 bytes long.
 Data: < &#192;$;&#247;           > 18 C0 24 3B F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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