Task 38644082
| Name | shp2_A20_A15_r0_4-QUICO_ATM_OpenFF23_NAGL_shp2-0-6-RND5528_4 |
| Workunit | 31589712 |
| Created | 8 May 2026, 3:14:24 UTC |
| Sent | 8 May 2026, 3:14:29 UTC |
| Report deadline | 13 May 2026, 3:14:29 UTC |
| Received | 8 May 2026, 7:11:58 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
| Computer ID | 619022 |
| Run time | 1 hours 16 min 51 sec |
| CPU time | 1 hours 16 min 5 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 35,334.17 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 730.78 MB |
| Peak swap size | 7.14 GB |
| Peak disk usage | 2.81 GB |
Stderr output
<core_client_version>8.0.2</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
(0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
22:51:09 (1780): wrapper (7.9.26016): starting
22:51:09 (1780): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A20_A15_0.pdb
QB_A20_A15_0.xml
QB_A20_A15.inpcrd
QB_A20_A15_input.yaml
QB_A20_A15.pdb
QB_A20_A15.prmtop
QB_A20_A15_sys.xml
run.bat
run.sh
22:51:15 (1780): Library/usr/bin/tar.exe exited; CPU time 0.000000
22:51:15 (1780): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\4\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\4\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "C:\ProgramData\BOINC\slots\4\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
File "C:\ProgramData\BOINC\slots\4\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
rx.scheduleJobs()
File "C:\ProgramData\BOINC\slots\4\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
self.transport.ProcessJobQueue(min_time,cycle_time)
File "C:\ProgramData\BOINC\slots\4\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
self.isDone(repl,0)
File "C:\ProgramData\BOINC\slots\4\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
retcode = self._update_replica(job)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\4\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 212, in _update_replica
pot = job['openmm_worker'].get_energy()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\4\Lib\site-packages\atom_openmm\ommworker.py", line 451, in get_energy
return self._worker_getenergy()
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\4\Lib\site-packages\atom_openmm\ommworker.py", line 400, in _worker_getenergy
state = self.simulation.context.getState(getEnergy = True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\4\Lib\site-packages\openmm\openmm.py", line 5022, in getState
state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Particle coordinate is NaN. For more information, see https://github.com/openmm/openmm/wiki/Frequently-Asked-Questions#nan
00:10:13 (1780): C:/Windows/system32/cmd.exe exited; CPU time 4565.828125
00:10:13 (1780): app exit status: 0x16
00:10:13 (1780): called boinc_finish(195)
0 bytes in 0 Free Blocks.
460 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 56428703 bytes.
Dumping objects ->
{3835310} normal block at 0x000001B0DE61C810, 48 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835299} normal block at 0x000001B0DCA446C0, 48 bytes long.
Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835288} normal block at 0x000001B0DCA445E0, 48 bytes long.
Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61
{3835277} normal block at 0x000001B0DCA44500, 48 bytes long.
Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835266} normal block at 0x000001B0DCA44880, 48 bytes long.
Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61
{3835235} normal block at 0x000001B0DE66A7F0, 64 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835224} normal block at 0x000001B0DE67F6F0, 102 bytes long.
Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
..\api\boinc_api.cpp(309) : {3835221} normal block at 0x000001B0DCA3A3B0, 8 bytes long.
Data: < àÜ° > 00 00 E0 DC B0 01 00 00
{3834573} normal block at 0x000001B0DE67ECA0, 102 bytes long.
Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
{3833959} normal block at 0x000001B0DCA3ACC0, 8 bytes long.
Data: <`¤¦Ü° > 60 A4 A6 DC B0 01 00 00
..\zip\boinc_zip.cpp(122) : {311} normal block at 0x000001B0DCA41180, 260 bytes long.
Data: < > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
{296} normal block at 0x000001B0DCA2F0B0, 80 bytes long.
Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C
{295} normal block at 0x000001B0DCA45C10, 16 bytes long.
Data: <Èd¤Ü° > C8 64 A4 DC B0 01 00 00 00 00 00 00 00 00 00 00
{294} normal block at 0x000001B0DCA45EE0, 16 bytes long.
Data: < d¤Ü° > A0 64 A4 DC B0 01 00 00 00 00 00 00 00 00 00 00
{293} normal block at 0x000001B0DCA3F4F0, 32 bytes long.
Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D
{292} normal block at 0x000001B0DCA45BC0, 16 bytes long.
Data: <xd¤Ü° > 78 64 A4 DC B0 01 00 00 00 00 00 00 00 00 00 00
{291} normal block at 0x000001B0DCA45B70, 16 bytes long.
Data: <Pd¤Ü° > 50 64 A4 DC B0 01 00 00 00 00 00 00 00 00 00 00
{290} normal block at 0x000001B0DCA45AD0, 16 bytes long.
Data: <(d¤Ü° > 28 64 A4 DC B0 01 00 00 00 00 00 00 00 00 00 00
{289} normal block at 0x000001B0DCA45A80, 16 bytes long.
Data: < d¤Ü° > 00 64 A4 DC B0 01 00 00 00 00 00 00 00 00 00 00
{288} normal block at 0x000001B0DCA44570, 48 bytes long.
Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F
{287} normal block at 0x000001B0DCA45800, 16 bytes long.
Data: < Ž£Ü° > 08 8E A3 DC B0 01 00 00 00 00 00 00 00 00 00 00
{286} normal block at 0x000001B0DCA3FFD0, 32 bytes long.
Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69
{285} normal block at 0x000001B0DCA45CB0, 16 bytes long.
Data: <à £Ü° > E0 8D A3 DC B0 01 00 00 00 00 00 00 00 00 00 00
{283} normal block at 0x000001B0DCA457B0, 16 bytes long.
Data: <¸ £Ü° > B8 8D A3 DC B0 01 00 00 00 00 00 00 00 00 00 00
{282} normal block at 0x000001B0DCA454E0, 16 bytes long.
Data: < £Ü° > 90 8D A3 DC B0 01 00 00 00 00 00 00 00 00 00 00
{281} normal block at 0x000001B0DCA45A30, 16 bytes long.
Data: <h £Ü° > 68 8D A3 DC B0 01 00 00 00 00 00 00 00 00 00 00
{280} normal block at 0x000001B0DCA45760, 16 bytes long.
Data: <@ £Ü° > 40 8D A3 DC B0 01 00 00 00 00 00 00 00 00 00 00
{279} normal block at 0x000001B0DCA45710, 16 bytes long.
Data: < £Ü° > 18 8D A3 DC B0 01 00 00 00 00 00 00 00 00 00 00
{278} normal block at 0x000001B0DCA3F850, 32 bytes long.
Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55
{277} normal block at 0x000001B0DCA45120, 16 bytes long.
Data: <ðŒ£Ü° > F0 8C A3 DC B0 01 00 00 00 00 00 00 00 00 00 00
{276} normal block at 0x000001B0DCA38CF0, 320 bytes long.
Data: < Q¤Ü° Pø£Ü° > 20 51 A4 DC B0 01 00 00 50 F8 A3 DC B0 01 00 00
{275} normal block at 0x000001B0DCA453F0, 16 bytes long.
Data: <àc¤Ü° > E0 63 A4 DC B0 01 00 00 00 00 00 00 00 00 00 00
{274} normal block at 0x000001B0DCA451C0, 16 bytes long.
Data: <¸c¤Ü° > B8 63 A4 DC B0 01 00 00 00 00 00 00 00 00 00 00
{273} normal block at 0x000001B0DCA40150, 32 bytes long.
Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65
{272} normal block at 0x000001B0DCA453A0, 16 bytes long.
Data: < c¤Ü° > 90 63 A4 DC B0 01 00 00 00 00 00 00 00 00 00 00
{271} normal block at 0x000001B0DCA40390, 32 bytes long.
Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62
{270} normal block at 0x000001B0DCA45C60, 16 bytes long.
Data: <Øb¤Ü° > D8 62 A4 DC B0 01 00 00 00 00 00 00 00 00 00 00
{269} normal block at 0x000001B0DCA45580, 16 bytes long.
Data: <°b¤Ü° > B0 62 A4 DC B0 01 00 00 00 00 00 00 00 00 00 00
{268} normal block at 0x000001B0DCA456C0, 16 bytes long.
Data: < b¤Ü° > 88 62 A4 DC B0 01 00 00 00 00 00 00 00 00 00 00
{267} normal block at 0x000001B0DCA45670, 16 bytes long.
Data: <`b¤Ü° > 60 62 A4 DC B0 01 00 00 00 00 00 00 00 00 00 00
{266} normal block at 0x000001B0DCA459E0, 16 bytes long.
Data: <8b¤Ü° > 38 62 A4 DC B0 01 00 00 00 00 00 00 00 00 00 00
{265} normal block at 0x000001B0DCA45530, 16 bytes long.
Data: < b¤Ü° > 10 62 A4 DC B0 01 00 00 00 00 00 00 00 00 00 00
{263} normal block at 0x000001B0DCA45E90, 16 bytes long.
Data: < D¤Ü° > 20 44 A4 DC B0 01 00 00 00 00 00 00 00 00 00 00
{262} normal block at 0x000001B0DCA44420, 40 bytes long.
Data: < ^¤Ü° ð§fÞ° > 90 5E A4 DC B0 01 00 00 F0 A7 66 DE B0 01 00 00
{261} normal block at 0x000001B0DCA45080, 16 bytes long.
Data: <ða¤Ü° > F0 61 A4 DC B0 01 00 00 00 00 00 00 00 00 00 00
{260} normal block at 0x000001B0DCA45620, 16 bytes long.
Data: <Èa¤Ü° > C8 61 A4 DC B0 01 00 00 00 00 00 00 00 00 00 00
{259} normal block at 0x000001B0DCA3FD30, 32 bytes long.
Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F
{258} normal block at 0x000001B0DCA45B20, 16 bytes long.
Data: < a¤Ü° > A0 61 A4 DC B0 01 00 00 00 00 00 00 00 00 00 00
{257} normal block at 0x000001B0DCA461A0, 992 bytes long.
Data: < [¤Ü° 0ý£Ü° > 20 5B A4 DC B0 01 00 00 30 FD A3 DC B0 01 00 00
{93} normal block at 0x000001B0DCA3FF70, 32 bytes long.
Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F
{92} normal block at 0x000001B0DCA3AD10, 16 bytes long.
Data: <àó£Ü° > E0 F3 A3 DC B0 01 00 00 00 00 00 00 00 00 00 00
{91} normal block at 0x000001B0DCA3F3E0, 40 bytes long.
Data: < ­£Ü° pÿ£Ü° > 10 AD A3 DC B0 01 00 00 70 FF A3 DC B0 01 00 00
{70} normal block at 0x000001B0DCA3A040, 16 bytes long.
Data: < êÎËö > 80 EA CE CB F6 7F 00 00 00 00 00 00 00 00 00 00
{69} normal block at 0x000001B0DCA3AE50, 16 bytes long.
Data: <@éÎËö > 40 E9 CE CB F6 7F 00 00 00 00 00 00 00 00 00 00
{68} normal block at 0x000001B0DCA3AC20, 16 bytes long.
Data: <øWËËö > F8 57 CB CB F6 7F 00 00 00 00 00 00 00 00 00 00
{67} normal block at 0x000001B0DCA3A540, 16 bytes long.
Data: <ØWËËö > D8 57 CB CB F6 7F 00 00 00 00 00 00 00 00 00 00
{66} normal block at 0x000001B0DCA39FF0, 16 bytes long.
Data: <P ËËö > 50 04 CB CB F6 7F 00 00 00 00 00 00 00 00 00 00
{65} normal block at 0x000001B0DCA39FA0, 16 bytes long.
Data: <0 ËËö > 30 04 CB CB F6 7F 00 00 00 00 00 00 00 00 00 00
{64} normal block at 0x000001B0DCA3ABD0, 16 bytes long.
Data: <à ËËö > E0 02 CB CB F6 7F 00 00 00 00 00 00 00 00 00 00
{63} normal block at 0x000001B0DCA3AE00, 16 bytes long.
Data: < ËËö > 10 04 CB CB F6 7F 00 00 00 00 00 00 00 00 00 00
{62} normal block at 0x000001B0DCA3AC70, 16 bytes long.
Data: <p ËËö > 70 04 CB CB F6 7F 00 00 00 00 00 00 00 00 00 00
{61} normal block at 0x000001B0DCA3AEA0, 16 bytes long.
Data: < ÀÉËö > 18 C0 C9 CB F6 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
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