Task 38641085

Name p38_3_A07_A23_r0_3-QUICO_ATM_OpenFF_NAGL_p38_3-5-6-RND1752_0
Workunit 31588323
Created 2 May 2026, 5:57:35 UTC
Sent 2 May 2026, 5:57:36 UTC
Report deadline 7 May 2026, 5:57:36 UTC
Received 2 May 2026, 23:19:57 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 638317
Run time 3 hours 36 min 23 sec
CPU time 3 hours 36 min 23 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 45,026.07 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 760.92 MB
Peak swap size 10.04 GB
Peak disk usage 3.08 GB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
20:50:07 (10348): wrapper (7.9.26016): starting
20:50:07 (10348): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A07_A23_0.pdb
QB_A07_A23_0.xml
QB_A07_A23.inpcrd
QB_A07_A23_input.yaml
QB_A07_A23.pdb
QB_A07_A23.prmtop
QB_A07_A23_sys.xml
run.bat
run.sh
20:50:08 (10348): Library/usr/bin/tar.exe exited; CPU time 0.000000
20:50:08 (10348): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
06:36:31 (3840): wrapper (7.9.26016): starting
06:36:31 (3840): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
&#131;T&#131;u&#131;f&#131;B&#131;&#140;&#131;N&#131;g&#131;&#138;&#130;&#220;&#130;&#189;&#130;&#205;&#131;t&#131;@&#131;C&#131;&#139; C:\ProgramData\BOINC\slots\1\tmp &#130;&#205;&#138;&#249;&#130;&#201;&#145;&#182;&#141;&#221;&#130;&#181;&#130;&#220;&#130;&#183;&#129;B
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
08:18:49 (3840): C:/Windows/system32/cmd.exe exited; CPU time 6314.296875
08:18:49 (3840): called boinc_finish(0)
0 bytes in 0 Free Blocks.
538 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 125121410 bytes.
Dumping objects ->
{1812} normal block at 0x000002BB8AE34BD0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1801} normal block at 0x000002BB8AE349A0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1790} normal block at 0x000002BB8AE348C0, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{1779} normal block at 0x000002BB8AE34D90, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1768} normal block at 0x000002BB8AE34930, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{1737} normal block at 0x000002BB8AE20730, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1726} normal block at 0x000002BB8AE1ED20, 141 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {1723} normal block at 0x000002BB8AE35AE0, 8 bytes long.
 Data: <  /     > 00 00 2F 8B BB 02 00 00 
{1003} normal block at 0x000002BB8AE1B440, 141 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{304} normal block at 0x000002BB8AE35F40, 8 bytes long.
 Data: < f      > F0 66 E3 8A BB 02 00 00 
{295} normal block at 0x000002BB8AE22250, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{294} normal block at 0x000002BB8AE359F0, 16 bytes long.
 Data: < e              > F8 65 E3 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000002BB8AE359A0, 16 bytes long.
 Data: < e              > D0 65 E3 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x000002BB8AE30B80, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{291} normal block at 0x000002BB8AE36210, 16 bytes long.
 Data: < e              > A8 65 E3 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000002BB8AE36170, 16 bytes long.
 Data: < e              > 80 65 E3 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x000002BB8AE35950, 16 bytes long.
 Data: <Xe              > 58 65 E3 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000002BB8AE35900, 16 bytes long.
 Data: <0e              > 30 65 E3 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x000002BB8AE34CB0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{286} normal block at 0x000002BB8AE35EF0, 16 bytes long.
 Data: <                > D8 B3 E1 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x000002BB8AE31180, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{284} normal block at 0x000002BB8AE358B0, 16 bytes long.
 Data: <                > B0 B3 E1 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000002BB8AE35A40, 16 bytes long.
 Data: <                > 88 B3 E1 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000002BB8AE35540, 16 bytes long.
 Data: <`               > 60 B3 E1 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000002BB8AE35860, 16 bytes long.
 Data: <8               > 38 B3 E1 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000002BB8AE35F90, 16 bytes long.
 Data: <                > 10 B3 E1 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000002BB8AE35C70, 16 bytes long.
 Data: <                > E8 B2 E1 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x000002BB8AE30940, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{276} normal block at 0x000002BB8AE357C0, 16 bytes long.
 Data: <                > C0 B2 E1 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000002BB8AE1B2C0, 320 bytes long.
 Data: < W      @       > C0 57 E3 8A BB 02 00 00 40 09 E3 8A BB 02 00 00 
{274} normal block at 0x000002BB8AE361C0, 16 bytes long.
 Data: < e              > 10 65 E3 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000002BB8AE356D0, 16 bytes long.
 Data: < d              > E8 64 E3 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x000002BB8AE315A0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{271} normal block at 0x000002BB8AE36120, 16 bytes long.
 Data: < d              > C0 64 E3 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x000002BB8AE314E0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{269} normal block at 0x000002BB8AE35680, 16 bytes long.
 Data: < d              > 08 64 E3 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x000002BB8AE35630, 16 bytes long.
 Data: < c              > E0 63 E3 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000002BB8AE35EA0, 16 bytes long.
 Data: < c              > B8 63 E3 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x000002BB8AE35400, 16 bytes long.
 Data: < c              > 90 63 E3 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000002BB8AE353B0, 16 bytes long.
 Data: <hc              > 68 63 E3 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x000002BB8AE360D0, 16 bytes long.
 Data: <@c              > 40 63 E3 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000002BB8AE36080, 16 bytes long.
 Data: < M              > 20 4D E3 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x000002BB8AE34D20, 40 bytes long.
 Data: < `      0       > 80 60 E3 8A BB 02 00 00 30 07 E2 8A BB 02 00 00 
{260} normal block at 0x000002BB8AE35A90, 16 bytes long.
 Data: < c              > 20 63 E3 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000002BB8AE355E0, 16 bytes long.
 Data: < b              > F8 62 E3 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x000002BB8AE31540, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{257} normal block at 0x000002BB8AE354F0, 16 bytes long.
 Data: < b              > D0 62 E3 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x000002BB8AE362D0, 992 bytes long.
 Data: < T      @       > F0 54 E3 8A BB 02 00 00 40 15 E3 8A BB 02 00 00 
{92} normal block at 0x000002BB8AE30B20, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{91} normal block at 0x000002BB8AE2CFB0, 16 bytes long.
 Data: <                > B0 DF E1 8A BB 02 00 00 00 00 00 00 00 00 00 00 
{90} normal block at 0x000002BB8AE1DFB0, 40 bytes long.
 Data: <                > B0 CF E2 8A BB 02 00 00 20 0B E3 8A BB 02 00 00 
{67} normal block at 0x000002BB8AE2DDC0, 16 bytes long.
 Data: <   o            > 80 EA C7 6F F7 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000002BB8AE2D2D0, 16 bytes long.
 Data: <@  o            > 40 E9 C7 6F F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000002BB8AE2DF00, 16 bytes long.
 Data: < W o            > F8 57 C4 6F F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000002BB8AE2DC30, 16 bytes long.
 Data: < W o            > D8 57 C4 6F F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000002BB8AE2D730, 16 bytes long.
 Data: <P  o            > 50 04 C4 6F F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000002BB8AE2DD70, 16 bytes long.
 Data: <0  o            > 30 04 C4 6F F7 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x000002BB8AE2D640, 16 bytes long.
 Data: <   o            > E0 02 C4 6F F7 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x000002BB8AE2D870, 16 bytes long.
 Data: <   o            > 10 04 C4 6F F7 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x000002BB8AE2DB90, 16 bytes long.
 Data: <p  o            > 70 04 C4 6F F7 7F 00 00 00 00 00 00 00 00 00 00 
{58} normal block at 0x000002BB8AE2D000, 16 bytes long.
 Data: <   o            > 18 C0 C2 6F F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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