Task 38639436

Name cdk8_A05_A23_r0_2-QUICO_ATM_GAFF2_NAGL_cdk8-5-6-RND2645_0
Workunit 31587003
Created 30 Apr 2026, 19:30:25 UTC
Sent 30 Apr 2026, 19:30:32 UTC
Report deadline 5 May 2026, 19:30:32 UTC
Received 1 May 2026, 9:08:54 UTC
Server state Over
Outcome Computation error
Client state Compute error
Exit status 195 (0x000000C3) EXIT_CHILD_FAILED
Computer ID 575758
Run time 31 min 37 sec
CPU time 21 min 53 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 7,070.50 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 671.89 MB
Peak swap size 5.51 GB
Peak disk usage 3.19 GB

Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<message>
Le syst�me d�exploitation ne peut pas ex�cuter (null).
 (0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
10:35:26 (26696): wrapper (7.9.26016): starting
10:35:26 (26696): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A05_A23_0.pdb
QB_A05_A23_0.xml
QB_A05_A23.inpcrd
QB_A05_A23_input.yaml
QB_A05_A23.pdb
QB_A05_A23.prmtop
QB_A05_A23_sys.xml
run.bat
run.sh
10:35:38 (26696): Library/usr/bin/tar.exe exited; CPU time 1.468750
10:35:38 (26696): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\10\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\10\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Traceback (most recent call last):
  File "<frozen runpy>", line 198, in _run_module_as_main
  File "<frozen runpy>", line 88, in _run_code
  File "C:\ProgramData\BOINC\slots\10\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
  File "C:\ProgramData\BOINC\slots\10\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
    rx.scheduleJobs()
  File "C:\ProgramData\BOINC\slots\10\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
    self.transport.ProcessJobQueue(min_time,cycle_time)
  File "C:\ProgramData\BOINC\slots\10\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
    self.isDone(repl,0)
  File "C:\ProgramData\BOINC\slots\10\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
    retcode = self._update_replica(job)
              ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\10\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 210, in _update_replica
    (pos,vel) = job['openmm_worker'].get_posvel()
                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\10\Lib\site-packages\atom_openmm\ommworker.py", line 467, in get_posvel
    state = self.context.getState(getPositions=True, getVelocities=True)
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\10\Lib\site-packages\openmm\openmm.py", line 5022, in getState
    state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: bad allocation
11:05:55 (26696): C:/Windows/system32/cmd.exe exited; CPU time 1311.765625
11:05:55 (26696): app exit status: 0x16
11:05:55 (26696): called boinc_finish(195)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
2288 bytes in 2 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 39308557 bytes.
Dumping objects ->
{3835453} normal block at 0x0000029B8AB790A0, 48 bytes long.
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{3835442} normal block at 0x0000029B8AB79AB0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835431} normal block at 0x0000029B8AB79B20, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835420} normal block at 0x0000029B8AB78FC0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835409} normal block at 0x0000029B8AB79C00, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835378} normal block at 0x0000029B8C864B20, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {3835365} normal block at 0x0000029B8AB4DF80, 8 bytes long.
 Data: <  &#176;&#138;&#155;   > 00 00 B0 8A 9B 02 00 00 
{3833975} normal block at 0x0000029B8AB4DE40, 8 bytes long.
 Data: <0&#221;&#179;&#138;&#155;   > 30 DD B3 8A 9B 02 00 00 
..\zip\boinc_zip.cpp(122) : {319} normal block at 0x0000029B8AB41660, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{304} normal block at 0x0000029B8AB42A90, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{303} normal block at 0x0000029B8AB55F30, 16 bytes long.
 Data: < m&#181;&#138;&#155;           > 18 6D B5 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{302} normal block at 0x0000029B8AB56390, 16 bytes long.
 Data: <&#240;l&#181;&#138;&#155;           > F0 6C B5 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{301} normal block at 0x0000029B8AB4F850, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{300} normal block at 0x0000029B8AB567F0, 16 bytes long.
 Data: <&#200;l&#181;&#138;&#155;           > C8 6C B5 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{299} normal block at 0x0000029B8AB56110, 16 bytes long.
 Data: <&#160;l&#181;&#138;&#155;           > A0 6C B5 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x0000029B8AB567A0, 16 bytes long.
 Data: <xl&#181;&#138;&#155;           > 78 6C B5 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{297} normal block at 0x0000029B8AB55D50, 16 bytes long.
 Data: <Pl&#181;&#138;&#155;           > 50 6C B5 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x0000029B8AB51260, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{295} normal block at 0x0000029B8AB562A0, 16 bytes long.
 Data: <X &#180;&#138;&#155;           > 58 03 B4 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x0000029B8AB50510, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{293} normal block at 0x0000029B8AB56700, 16 bytes long.
 Data: <0 &#180;&#138;&#155;           > 30 03 B4 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x0000029B8AB55EE0, 16 bytes long.
 Data: <  &#180;&#138;&#155;           > 08 03 B4 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x0000029B8AB55A80, 16 bytes long.
 Data: <&#224; &#180;&#138;&#155;           > E0 02 B4 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x0000029B8AB55CB0, 16 bytes long.
 Data: <&#184; &#180;&#138;&#155;           > B8 02 B4 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x0000029B8AB55DF0, 16 bytes long.
 Data: <  &#180;&#138;&#155;           > 90 02 B4 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x0000029B8AB564D0, 16 bytes long.
 Data: <h &#180;&#138;&#155;           > 68 02 B4 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x0000029B8AB4F7F0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{285} normal block at 0x0000029B8AB55F80, 16 bytes long.
 Data: <@ &#180;&#138;&#155;           > 40 02 B4 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x0000029B8AB40240, 320 bytes long.
 Data: < _&#181;&#138;&#155;   &#240;&#247;&#180;&#138;&#155;   > 80 5F B5 8A 9B 02 00 00 F0 F7 B4 8A 9B 02 00 00 
{283} normal block at 0x0000029B8AB56200, 16 bytes long.
 Data: <0l&#181;&#138;&#155;           > 30 6C B5 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x0000029B8AB55E90, 16 bytes long.
 Data: < l&#181;&#138;&#155;           > 08 6C B5 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x0000029B8AB501B0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{280} normal block at 0x0000029B8AB55A30, 16 bytes long.
 Data: <&#224;k&#181;&#138;&#155;           > E0 6B B5 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x0000029B8AB4F730, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{278} normal block at 0x0000029B8AB55B20, 16 bytes long.
 Data: <(k&#181;&#138;&#155;           > 28 6B B5 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x0000029B8AB565C0, 16 bytes long.
 Data: < k&#181;&#138;&#155;           > 00 6B B5 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x0000029B8AB568E0, 16 bytes long.
 Data: <&#216;j&#181;&#138;&#155;           > D8 6A B5 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x0000029B8AB55C60, 16 bytes long.
 Data: <&#176;j&#181;&#138;&#155;           > B0 6A B5 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x0000029B8AB563E0, 16 bytes long.
 Data: < j&#181;&#138;&#155;           > 88 6A B5 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x0000029B8AB56930, 16 bytes long.
 Data: <`j&#181;&#138;&#155;           > 60 6A B5 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x0000029B8AB55E40, 16 bytes long.
 Data: <  &#181;&#138;&#155;           > 80 11 B5 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x0000029B8AB51180, 40 bytes long.
 Data: <@^&#181;&#138;&#155;    K&#134;&#140;&#155;   > 40 5E B5 8A 9B 02 00 00 20 4B 86 8C 9B 02 00 00 
{269} normal block at 0x0000029B8AB56070, 16 bytes long.
 Data: <@j&#181;&#138;&#155;           > 40 6A B5 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x0000029B8AB55B70, 16 bytes long.
 Data: < j&#181;&#138;&#155;           > 18 6A B5 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x0000029B8AB50630, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{266} normal block at 0x0000029B8AB55DA0, 16 bytes long.
 Data: <&#240;i&#181;&#138;&#155;           > F0 69 B5 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x0000029B8AB569F0, 992 bytes long.
 Data: <&#160;]&#181;&#138;&#155;   0 &#181;&#138;&#155;   > A0 5D B5 8A 9B 02 00 00 30 06 B5 8A 9B 02 00 00 
{101} normal block at 0x0000029B8AB4F790, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{100} normal block at 0x0000029B8AB4D5D0, 16 bytes long.
 Data: <&#192; &#181;&#138;&#155;           > C0 16 B5 8A 9B 02 00 00 00 00 00 00 00 00 00 00 
{99} normal block at 0x0000029B8AB516C0, 40 bytes long.
 Data: <&#208;&#213;&#180;&#138;&#155;    &#247;&#180;&#138;&#155;   > D0 D5 B4 8A 9B 02 00 00 90 F7 B4 8A 9B 02 00 00 
{78} normal block at 0x0000029B8AB4D580, 16 bytes long.
 Data: < &#234;u,&#246;           > 80 EA 75 2C F6 7F 00 00 00 00 00 00 00 00 00 00 
{77} normal block at 0x0000029B8AB4DDA0, 16 bytes long.
 Data: <@&#233;u,&#246;           > 40 E9 75 2C F6 7F 00 00 00 00 00 00 00 00 00 00 
{76} normal block at 0x0000029B8AB4D990, 16 bytes long.
 Data: <&#248;Wr,&#246;           > F8 57 72 2C F6 7F 00 00 00 00 00 00 00 00 00 00 
{75} normal block at 0x0000029B8AB4E250, 16 bytes long.
 Data: <&#216;Wr,&#246;           > D8 57 72 2C F6 7F 00 00 00 00 00 00 00 00 00 00 
{74} normal block at 0x0000029B8AB4DD50, 16 bytes long.
 Data: <P r,&#246;           > 50 04 72 2C F6 7F 00 00 00 00 00 00 00 00 00 00 
{73} normal block at 0x0000029B8AB4DFD0, 16 bytes long.
 Data: <0 r,&#246;           > 30 04 72 2C F6 7F 00 00 00 00 00 00 00 00 00 00 
{72} normal block at 0x0000029B8AB4E2A0, 16 bytes long.
 Data: <&#224; r,&#246;           > E0 02 72 2C F6 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x0000029B8AB4D8A0, 16 bytes long.
 Data: <  r,&#246;           > 10 04 72 2C F6 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x0000029B8AB4E020, 16 bytes long.
 Data: <p r,&#246;           > 70 04 72 2C F6 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x0000029B8AB4E200, 16 bytes long.
 Data: < &#192;p,&#246;           > 18 C0 70 2C F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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