Task 38638011

Name JNK1_RE_A19_A14_r0_4-QUICO_ATM_GAFF2_NAGL_JNK1_RE-1-6-RND9986_0
Workunit 31585896
Created 29 Apr 2026, 23:36:09 UTC
Sent 29 Apr 2026, 23:36:13 UTC
Report deadline 4 May 2026, 23:36:13 UTC
Received 30 Apr 2026, 15:29:22 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 638645
Run time 5 hours 1 min 49 sec
CPU time 5 hours 1 min 49 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 11,927.91 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 735.22 MB
Peak swap size 12.91 GB
Peak disk usage 3.74 GB

Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:30:54 (18356): wrapper (7.9.26016): starting
12:30:54 (18356): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A19_A14_0.pdb
QB_A19_A14_0.xml
QB_A19_A14.inpcrd
QB_A19_A14_input.yaml
QB_A19_A14.pdb
QB_A19_A14.prmtop
QB_A19_A14_sys.xml
run.bat
run.sh
12:30:55 (18356): Library/usr/bin/tar.exe exited; CPU time 0.015625
12:30:55 (18356): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\16\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\16\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
17:25:49 (18356): C:/Windows/system32/cmd.exe exited; CPU time 18109.062500
17:25:49 (18356): called boinc_finish(0)
0 bytes in 0 Free Blocks.
656 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 211601951 bytes.
Dumping objects ->
{3835653} normal block at 0x000001A32FB75BE0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835642} normal block at 0x000001A32FB75390, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835631} normal block at 0x000001A32FB75550, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835620} normal block at 0x000001A32FB75EF0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835609} normal block at 0x000001A32FB756A0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835578} normal block at 0x000001A33188C390, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835567} normal block at 0x000001A32FB494C0, 200 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835564} normal block at 0x000001A32FB45570, 8 bytes long.
 Data: <  e1&#163;   > 00 00 65 31 A3 01 00 00 
{3834735} normal block at 0x000001A32FB48F70, 200 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833945} normal block at 0x000001A32FB461A0, 8 bytes long.
 Data: <&#160; &#193;/&#163;   > A0 FF C1 2F A3 01 00 00 
..\zip\boinc_zip.cpp(122) : {304} normal block at 0x000001A32FB50DC0, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x000001A32FB35B30, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{288} normal block at 0x000001A32FB52760, 16 bytes long.
 Data: <&#184;.&#181;/&#163;           > B8 2E B5 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x000001A32FB52710, 16 bytes long.
 Data: < .&#181;/&#163;           > 90 2E B5 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x000001A32FB46E70, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{285} normal block at 0x000001A32FB52030, 16 bytes long.
 Data: <h.&#181;/&#163;           > 68 2E B5 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x000001A32FB52440, 16 bytes long.
 Data: <@.&#181;/&#163;           > 40 2E B5 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x000001A32FB51BD0, 16 bytes long.
 Data: < .&#181;/&#163;           > 18 2E B5 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000001A32FB51D60, 16 bytes long.
 Data: <&#240;-&#181;/&#163;           > F0 2D B5 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000001A32FB4B790, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{280} normal block at 0x000001A32FB51C20, 16 bytes long.
 Data: <&#200;Z&#179;/&#163;           > C8 5A B3 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000001A32FB46B70, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{278} normal block at 0x000001A32FB51FE0, 16 bytes long.
 Data: <&#160;Z&#179;/&#163;           > A0 5A B3 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000001A32FB523F0, 16 bytes long.
 Data: <xZ&#179;/&#163;           > 78 5A B3 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000001A32FB52350, 16 bytes long.
 Data: <PZ&#179;/&#163;           > 50 5A B3 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x000001A32FB521C0, 16 bytes long.
 Data: <(Z&#179;/&#163;           > 28 5A B3 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000001A32FB525D0, 16 bytes long.
 Data: < Z&#179;/&#163;           > 00 5A B3 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x000001A32FB52120, 16 bytes long.
 Data: <&#216;Y&#179;/&#163;           > D8 59 B3 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x000001A32FB46B10, 32 bytes long.
 Data: <CUDA_DEVICE=1 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 31 00 50 55 
{270} normal block at 0x000001A32FB522B0, 16 bytes long.
 Data: <&#176;Y&#179;/&#163;           > B0 59 B3 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x000001A32FB359B0, 320 bytes long.
 Data: <&#176;"&#181;/&#163;    k&#180;/&#163;   > B0 22 B5 2F A3 01 00 00 10 6B B4 2F A3 01 00 00 
{268} normal block at 0x000001A32FB52260, 16 bytes long.
 Data: <&#208;-&#181;/&#163;           > D0 2D B5 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000001A32FB52A80, 16 bytes long.
 Data: <&#168;-&#181;/&#163;           > A8 2D B5 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x000001A32FB46F30, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{265} normal block at 0x000001A32FB52170, 16 bytes long.
 Data: < -&#181;/&#163;           > 80 2D B5 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x000001A32FB46E10, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{263} normal block at 0x000001A32FB529E0, 16 bytes long.
 Data: <&#200;,&#181;/&#163;           > C8 2C B5 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000001A32FB51EF0, 16 bytes long.
 Data: <&#160;,&#181;/&#163;           > A0 2C B5 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x000001A32FB51F40, 16 bytes long.
 Data: <x,&#181;/&#163;           > 78 2C B5 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x000001A32FB523A0, 16 bytes long.
 Data: <P,&#181;/&#163;           > 50 2C B5 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000001A32FB52210, 16 bytes long.
 Data: <(,&#181;/&#163;           > 28 2C B5 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x000001A32FB52AD0, 16 bytes long.
 Data: < ,&#181;/&#163;           > 00 2C B5 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x000001A32FB520D0, 16 bytes long.
 Data: <&#176;&#182;&#180;/&#163;           > B0 B6 B4 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{255} normal block at 0x000001A32FB4B6B0, 40 bytes long.
 Data: <&#208; &#181;/&#163;    &#195; 1&#163;   > D0 20 B5 2F A3 01 00 00 90 C3 88 31 A3 01 00 00 
{254} normal block at 0x000001A32FB51EA0, 16 bytes long.
 Data: <&#224;+&#181;/&#163;           > E0 2B B5 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{253} normal block at 0x000001A32FB51F90, 16 bytes long.
 Data: <&#184;+&#181;/&#163;           > B8 2B B5 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{252} normal block at 0x000001A32FB46D50, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{251} normal block at 0x000001A32FB52580, 16 bytes long.
 Data: < +&#181;/&#163;           > 90 2B B5 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{250} normal block at 0x000001A32FB52B90, 992 bytes long.
 Data: < %&#181;/&#163;   Pm&#180;/&#163;   > 80 25 B5 2F A3 01 00 00 50 6D B4 2F A3 01 00 00 
{86} normal block at 0x000001A32FB46990, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{85} normal block at 0x000001A32FB45FC0, 16 bytes long.
 Data: <P&#185;&#180;/&#163;           > 50 B9 B4 2F A3 01 00 00 00 00 00 00 00 00 00 00 
{84} normal block at 0x000001A32FB4B950, 40 bytes long.
 Data: <&#192;_&#180;/&#163;    i&#180;/&#163;   > C0 5F B4 2F A3 01 00 00 90 69 B4 2F A3 01 00 00 
{63} normal block at 0x000001A32FB45B60, 16 bytes long.
 Data: < &#234;,&#167;&#246;           > 80 EA 2C A7 F6 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000001A32FB45AC0, 16 bytes long.
 Data: <@&#233;,&#167;&#246;           > 40 E9 2C A7 F6 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x000001A32FB45F70, 16 bytes long.
 Data: <&#248;W)&#167;&#246;           > F8 57 29 A7 F6 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x000001A32FB46240, 16 bytes long.
 Data: <&#216;W)&#167;&#246;           > D8 57 29 A7 F6 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x000001A32FB45ED0, 16 bytes long.
 Data: <P )&#167;&#246;           > 50 04 29 A7 F6 7F 00 00 00 00 00 00 00 00 00 00 
{58} normal block at 0x000001A32FB45660, 16 bytes long.
 Data: <0 )&#167;&#246;           > 30 04 29 A7 F6 7F 00 00 00 00 00 00 00 00 00 00 
{57} normal block at 0x000001A32FB46380, 16 bytes long.
 Data: <&#224; )&#167;&#246;           > E0 02 29 A7 F6 7F 00 00 00 00 00 00 00 00 00 00 
{56} normal block at 0x000001A32FB46420, 16 bytes long.
 Data: <  )&#167;&#246;           > 10 04 29 A7 F6 7F 00 00 00 00 00 00 00 00 00 00 
{55} normal block at 0x000001A32FB45E30, 16 bytes long.
 Data: <p )&#167;&#246;           > 70 04 29 A7 F6 7F 00 00 00 00 00 00 00 00 00 00 
{54} normal block at 0x000001A32FB45A70, 16 bytes long.
 Data: < &#192;'&#167;&#246;           > 18 C0 27 A7 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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