Task 38602051

Name JNK1_A14_A16_r0_1-QUICO_ATM_GAFF2_NAGL_JNK1-4-6-RND1088_0
Workunit 31556519
Created 9 Apr 2026, 20:45:50 UTC
Sent 9 Apr 2026, 20:46:04 UTC
Report deadline 14 Apr 2026, 20:46:04 UTC
Received 10 Apr 2026, 6:49:23 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 651345
Run time 6 hours 27 min 31 sec
CPU time 6 hours 27 min 31 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 36,135.86 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 663.70 MB
Peak swap size 12.96 GB
Peak disk usage 3.07 GB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
19:07:49 (9064): wrapper (7.9.26016): starting
19:07:49 (9064): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A14_A16_0.pdb
QB_A14_A16_0.xml
QB_A14_A16.inpcrd
QB_A14_A16_input.yaml
QB_A14_A16.pdb
QB_A14_A16.prmtop
QB_A14_A16_sys.xml
run.bat
run.sh
19:07:50 (9064): Library/usr/bin/tar.exe exited; CPU time 0.015625
19:07:50 (9064): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
01:26:56 (9064): C:/Windows/system32/cmd.exe exited; CPU time 23251.406250
01:26:56 (9064): called boinc_finish(0)
0 bytes in 0 Free Blocks.
726 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 282594303 bytes.
Dumping objects ->
{3835564} normal block at 0x000002235E561B60, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835553} normal block at 0x000002235E5619A0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835542} normal block at 0x000002235E561C40, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835531} normal block at 0x000002235E561BD0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835520} normal block at 0x000002235E561930, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835489} normal block at 0x000002235E654AF0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835478} normal block at 0x000002235C8E4340, 235 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835475} normal block at 0x000002235C8DDA80, 8 bytes long.
 Data: <  &#134;\#   > 00 00 86 5C 23 02 00 00 
{3834699} normal block at 0x000002235C8E4210, 235 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833951} normal block at 0x000002235C8DD030, 8 bytes long.
 Data: < &#234;&#155;\#   > 20 EA 9B 5C 23 02 00 00 
..\zip\boinc_zip.cpp(122) : {307} normal block at 0x000002235C8D0D50, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x000002235C8D1AF0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{291} normal block at 0x000002235C8E52D0, 16 bytes long.
 Data: <&#232;\&#142;\#           > E8 5C 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000002235C8E4920, 16 bytes long.
 Data: <&#192;\&#142;\#           > C0 5C 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x000002235C8E0440, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{288} normal block at 0x000002235C8E4D80, 16 bytes long.
 Data: < \&#142;\#           > 98 5C 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x000002235C8E51E0, 16 bytes long.
 Data: <p\&#142;\#           > 70 5C 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x000002235C8E5370, 16 bytes long.
 Data: <H\&#142;\#           > 48 5C 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x000002235C8E4EC0, 16 bytes long.
 Data: < \&#142;\#           > 20 5C 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x000002235C8CC3C0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{283} normal block at 0x000002235C8E4D30, 16 bytes long.
 Data: <&#168; &#142;\#           > A8 01 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000002235C8E0320, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{281} normal block at 0x000002235C8E4CE0, 16 bytes long.
 Data: <  &#142;\#           > 80 01 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000002235C8E5140, 16 bytes long.
 Data: <X &#142;\#           > 58 01 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000002235C8E4A10, 16 bytes long.
 Data: <0 &#142;\#           > 30 01 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x000002235C8E4970, 16 bytes long.
 Data: <  &#142;\#           > 08 01 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000002235C8E54B0, 16 bytes long.
 Data: <&#224; &#142;\#           > E0 00 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000002235C8E4E20, 16 bytes long.
 Data: <&#184; &#142;\#           > B8 00 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x000002235C8E0980, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{273} normal block at 0x000002235C8E50F0, 16 bytes long.
 Data: <  &#142;\#           > 90 00 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x000002235C8E0090, 320 bytes long.
 Data: <&#240;P&#142;\#    	&#142;\#   > F0 50 8E 5C 23 02 00 00 80 09 8E 5C 23 02 00 00 
{271} normal block at 0x000002235C8E47E0, 16 bytes long.
 Data: < \&#142;\#           > 00 5C 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x000002235C8E50A0, 16 bytes long.
 Data: <&#216;[&#142;\#           > D8 5B 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x000002235C8E06E0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{268} normal block at 0x000002235C8E4F60, 16 bytes long.
 Data: <&#176;[&#142;\#           > B0 5B 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000002235C8E0860, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{266} normal block at 0x000002235C8E4FB0, 16 bytes long.
 Data: <&#248;Z&#142;\#           > F8 5A 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000002235C8E4BA0, 16 bytes long.
 Data: <&#208;Z&#142;\#           > D0 5A 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x000002235C8E4BF0, 16 bytes long.
 Data: <&#168;Z&#142;\#           > A8 5A 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x000002235C8E5190, 16 bytes long.
 Data: < Z&#142;\#           > 80 5A 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000002235C8E5050, 16 bytes long.
 Data: <XZ&#142;\#           > 58 5A 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x000002235C8E4C90, 16 bytes long.
 Data: <0Z&#142;\#           > 30 5A 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000002235C8E4B00, 16 bytes long.
 Data: <p&#224;&#140;\#           > 70 E0 8C 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x000002235C8CE070, 40 bytes long.
 Data: < K&#142;\#   &#240;Je^#   > 00 4B 8E 5C 23 02 00 00 F0 4A 65 5E 23 02 00 00 
{257} normal block at 0x000002235C8E4C40, 16 bytes long.
 Data: < Z&#142;\#           > 10 5A 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x000002235C8E4AB0, 16 bytes long.
 Data: <&#232;Y&#142;\#           > E8 59 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{255} normal block at 0x000002235C8E0380, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{254} normal block at 0x000002235C8E4E70, 16 bytes long.
 Data: <&#192;Y&#142;\#           > C0 59 8E 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{253} normal block at 0x000002235C8E59C0, 992 bytes long.
 Data: <pN&#142;\#     &#142;\#   > 70 4E 8E 5C 23 02 00 00 80 03 8E 5C 23 02 00 00 
{89} normal block at 0x000002235C8E05C0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{88} normal block at 0x000002235C8DDB70, 16 bytes long.
 Data: <&#208;&#173;&#140;\#           > D0 AD 8C 5C 23 02 00 00 00 00 00 00 00 00 00 00 
{87} normal block at 0x000002235C8CADD0, 40 bytes long.
 Data: <p&#219; \#   &#192; &#142;\#   > 70 DB 8D 5C 23 02 00 00 C0 05 8E 5C 23 02 00 00 
{66} normal block at 0x000002235C8DD990, 16 bytes long.
 Data: < &#234;&#155;&#196;&#246;           > 80 EA 9B C4 F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000002235C8DDBC0, 16 bytes long.
 Data: <@&#233;&#155;&#196;&#246;           > 40 E9 9B C4 F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000002235C8DD580, 16 bytes long.
 Data: <&#248;W &#196;&#246;           > F8 57 98 C4 F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000002235C8DCFE0, 16 bytes long.
 Data: <&#216;W &#196;&#246;           > D8 57 98 C4 F6 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000002235C8DD3A0, 16 bytes long.
 Data: <P  &#196;&#246;           > 50 04 98 C4 F6 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x000002235C8DD9E0, 16 bytes long.
 Data: <0  &#196;&#246;           > 30 04 98 C4 F6 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x000002235C8DD530, 16 bytes long.
 Data: <&#224;  &#196;&#246;           > E0 02 98 C4 F6 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x000002235C8DCF40, 16 bytes long.
 Data: <   &#196;&#246;           > 10 04 98 C4 F6 7F 00 00 00 00 00 00 00 00 00 00 
{58} normal block at 0x000002235C8DD1C0, 16 bytes long.
 Data: <p  &#196;&#246;           > 70 04 98 C4 F6 7F 00 00 00 00 00 00 00 00 00 00 
{57} normal block at 0x000002235C8DD760, 16 bytes long.
 Data: < &#192;&#150;&#196;&#246;           > 18 C0 96 C4 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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