Task 38601263

Name MCL1_A27_A40_r0_2-QUICO_ATM_GAFF2_NAGL_MCL1-4-6-RND0631_0
Workunit 31555867
Created 9 Apr 2026, 12:09:18 UTC
Sent 9 Apr 2026, 12:09:24 UTC
Report deadline 14 Apr 2026, 12:09:24 UTC
Received 9 Apr 2026, 20:37:27 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 648012
Run time 2 hours 24 min 1 sec
CPU time 2 hours 24 min 1 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 26,737.47 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 523.81 MB
Peak swap size 9.63 GB
Peak disk usage 2.91 GB

Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<stderr_txt>
11:15:21 (30088): wrapper (7.9.26016): starting
11:15:21 (30088): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A27_A40_0.pdb
QB_A27_A40_0.xml
QB_A27_A40.inpcrd
QB_A27_A40_input.yaml
QB_A27_A40.pdb
QB_A27_A40.prmtop
QB_A27_A40_sys.xml
run.bat
run.sh
11:15:22 (30088): Library/usr/bin/tar.exe exited; CPU time 0.015625
11:15:22 (30088): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
13:37:05 (30088): C:/Windows/system32/cmd.exe exited; CPU time 8641.765625
13:37:05 (30088): called boinc_finish(0)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 167739017 bytes.
Dumping objects ->
{3835428} normal block at 0x000001E6049C5EF0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835417} normal block at 0x000001E6049C5E80, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835406} normal block at 0x000001E6049C6430, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835395} normal block at 0x000001E6049C6200, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835384} normal block at 0x000001E6049C6270, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835353} normal block at 0x000001E606713EB0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {3835340} normal block at 0x000001E6049BCF70, 8 bytes long.
 Data: <  8 &#230;   > 00 00 38 06 E6 01 00 00 
{3833957} normal block at 0x000001E6049BDCE0, 8 bytes long.
 Data: < >w &#230;   > 20 3E 77 06 E6 01 00 00 
..\zip\boinc_zip.cpp(122) : {310} normal block at 0x000001E6049B0D50, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x000001E6049B1A10, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{294} normal block at 0x000001E6049C5410, 16 bytes long.
 Data: <8]&#156; &#230;           > 38 5D 9C 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000001E6049C5320, 16 bytes long.
 Data: < ]&#156; &#230;           > 10 5D 9C 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x000001E6049C13F0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{291} normal block at 0x000001E6049C4E70, 16 bytes long.
 Data: <&#232;\&#156; &#230;           > E8 5C 9C 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000001E6049C51E0, 16 bytes long.
 Data: <&#192;\&#156; &#230;           > C0 5C 9C 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x000001E6049C4FB0, 16 bytes long.
 Data: < \&#156; &#230;           > 98 5C 9C 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000001E6049C4DD0, 16 bytes long.
 Data: <p\&#156; &#230;           > 70 5C 9C 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x000001E6049C6510, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{286} normal block at 0x000001E6049C5190, 16 bytes long.
 Data: <  &#155; &#230;           > 18 07 9B 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x000001E6049C12D0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{284} normal block at 0x000001E6049C4830, 16 bytes long.
 Data: <&#240; &#155; &#230;           > F0 06 9B 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000001E6049C4BA0, 16 bytes long.
 Data: <&#200; &#155; &#230;           > C8 06 9B 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000001E6049C4AB0, 16 bytes long.
 Data: <&#160; &#155; &#230;           > A0 06 9B 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000001E6049C52D0, 16 bytes long.
 Data: <x &#155; &#230;           > 78 06 9B 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000001E6049C5460, 16 bytes long.
 Data: <P &#155; &#230;           > 50 06 9B 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000001E6049C47E0, 16 bytes long.
 Data: <( &#155; &#230;           > 28 06 9B 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x000001E6049C0CD0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{276} normal block at 0x000001E6049C5280, 16 bytes long.
 Data: <  &#155; &#230;           > 00 06 9B 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000001E6049B0600, 320 bytes long.
 Data: < R&#156; &#230;   &#208; &#156; &#230;   > 80 52 9C 04 E6 01 00 00 D0 0C 9C 04 E6 01 00 00 
{274} normal block at 0x000001E6049C5140, 16 bytes long.
 Data: <P\&#156; &#230;           > 50 5C 9C 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000001E6049C4740, 16 bytes long.
 Data: <(\&#156; &#230;           > 28 5C 9C 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x000001E6049C1630, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{271} normal block at 0x000001E6049C4970, 16 bytes long.
 Data: < \&#156; &#230;           > 00 5C 9C 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x000001E6049C10F0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{269} normal block at 0x000001E6049C4D80, 16 bytes long.
 Data: <H[&#156; &#230;           > 48 5B 9C 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x000001E6049C4790, 16 bytes long.
 Data: < [&#156; &#230;           > 20 5B 9C 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000001E6049C50F0, 16 bytes long.
 Data: <&#248;Z&#156; &#230;           > F8 5A 9C 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x000001E6049C5000, 16 bytes long.
 Data: <&#208;Z&#156; &#230;           > D0 5A 9C 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000001E6049C50A0, 16 bytes long.
 Data: <&#168;Z&#156; &#230;           > A8 5A 9C 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x000001E6049C55A0, 16 bytes long.
 Data: < Z&#156; &#230;           > 80 5A 9C 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000001E6049C4F60, 16 bytes long.
 Data: <0&#210;&#154; &#230;           > 30 D2 9A 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x000001E6049AD230, 40 bytes long.
 Data: <`O&#156; &#230;   &#176;>q &#230;   > 60 4F 9C 04 E6 01 00 00 B0 3E 71 06 E6 01 00 00 
{260} normal block at 0x000001E6049C4F10, 16 bytes long.
 Data: <`Z&#156; &#230;           > 60 5A 9C 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000001E6049C4880, 16 bytes long.
 Data: <8Z&#156; &#230;           > 38 5A 9C 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x000001E6049C0790, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{257} normal block at 0x000001E6049C4E20, 16 bytes long.
 Data: < Z&#156; &#230;           > 10 5A 9C 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x000001E6049C5A10, 992 bytes long.
 Data: < N&#156; &#230;     &#156; &#230;   > 20 4E 9C 04 E6 01 00 00 90 07 9C 04 E6 01 00 00 
{92} normal block at 0x000001E6049C0A90, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{91} normal block at 0x000001E6049BD9C0, 16 bytes long.
 Data: <0 &#156; &#230;           > 30 06 9C 04 E6 01 00 00 00 00 00 00 00 00 00 00 
{90} normal block at 0x000001E6049C0630, 40 bytes long.
 Data: <&#192;&#217;&#155; &#230;     &#156; &#230;   > C0 D9 9B 04 E6 01 00 00 90 0A 9C 04 E6 01 00 00 
{69} normal block at 0x000001E6049BDE20, 16 bytes long.
 Data: < &#234;&#166;&#249;&#246;           > 80 EA A6 F9 F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000001E6049BD420, 16 bytes long.
 Data: <@&#233;&#166;&#249;&#246;           > 40 E9 A6 F9 F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000001E6049BDC90, 16 bytes long.
 Data: <&#248;W&#163;&#249;&#246;           > F8 57 A3 F9 F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000001E6049BD380, 16 bytes long.
 Data: <&#216;W&#163;&#249;&#246;           > D8 57 A3 F9 F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000001E6049BD920, 16 bytes long.
 Data: <P &#163;&#249;&#246;           > 50 04 A3 F9 F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000001E6049BD0B0, 16 bytes long.
 Data: <0 &#163;&#249;&#246;           > 30 04 A3 F9 F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000001E6049BD060, 16 bytes long.
 Data: <&#224; &#163;&#249;&#246;           > E0 02 A3 F9 F6 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000001E6049BD2E0, 16 bytes long.
 Data: <  &#163;&#249;&#246;           > 10 04 A3 F9 F6 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x000001E6049BD970, 16 bytes long.
 Data: <p &#163;&#249;&#246;           > 70 04 A3 F9 F6 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x000001E6049BD3D0, 16 bytes long.
 Data: < &#192;&#161;&#249;&#246;           > 18 C0 A1 F9 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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