Task 38600841

Name BACE_A16_A05_r0_3-QUICO_ATM_GAFF2_NAGL_BACE-2-6-RND3476_1
Workunit 31555461
Created 9 Apr 2026, 7:50:15 UTC
Sent 9 Apr 2026, 7:50:23 UTC
Report deadline 14 Apr 2026, 7:50:23 UTC
Received 9 Apr 2026, 14:28:11 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 614965
Run time 6 hours 37 min 5 sec
CPU time 6 hours 19 min 56 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 12,851.11 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 567.50 MB
Peak swap size 3.73 GB
Peak disk usage 3.23 GB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
09:52:22 (3540): wrapper (7.9.26016): starting
09:52:22 (3540): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A16_A05_0.pdb
QB_A16_A05_0.xml
QB_A16_A05.inpcrd
QB_A16_A05_input.yaml
QB_A16_A05.pdb
QB_A16_A05.prmtop
QB_A16_A05_sys.xml
run.bat
run.sh
09:52:24 (3540): Library/usr/bin/tar.exe exited; CPU time 0.000000
09:52:24 (3540): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'J:\ProgramData\BOINC\slots\8\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'J:\ProgramData\BOINC\slots\8\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
16:27:50 (3540): C:/Windows/system32/cmd.exe exited; CPU time 22796.171875
16:27:50 (3540): called boinc_finish(0)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
2288 bytes in 2 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 402255831 bytes.
Dumping objects ->
{3835254} normal block at 0x000001F6A55CB1E0, 48 bytes long.
 Data: <PATH=J:\ProgramD> 50 41 54 48 3D 4A 3A 5C 50 72 6F 67 72 61 6D 44 
{3835243} normal block at 0x000001F6A55CBB10, 48 bytes long.
 Data: <HOME=J:\ProgramD> 48 4F 4D 45 3D 4A 3A 5C 50 72 6F 67 72 61 6D 44 
{3835232} normal block at 0x000001F6A55CBB80, 48 bytes long.
 Data: <TMP=J:\ProgramDa> 54 4D 50 3D 4A 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835221} normal block at 0x000001F6A55CB9C0, 48 bytes long.
 Data: <TEMP=J:\ProgramD> 54 45 4D 50 3D 4A 3A 5C 50 72 6F 67 72 61 6D 44 
{3835210} normal block at 0x000001F6A55CADF0, 48 bytes long.
 Data: <TMPDIR=J:\Progra> 54 4D 50 44 49 52 3D 4A 3A 5C 50 72 6F 67 72 61 
{3835179} normal block at 0x000001F6A6F10850, 64 bytes long.
 Data: <PATH=J:\ProgramD> 50 41 54 48 3D 4A 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {3835166} normal block at 0x000001F6A5599970, 8 bytes long.
 Data: <  U&#165;&#246;   > 00 00 55 A5 F6 01 00 00 
{3833971} normal block at 0x000001F6A559A410, 8 bytes long.
 Data: < !&#255;&#166;&#246;   > 80 21 FF A6 F6 01 00 00 
..\zip\boinc_zip.cpp(122) : {317} normal block at 0x000001F6A55A4D50, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{302} normal block at 0x000001F6A55A5C90, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{301} normal block at 0x000001F6A55A6790, 16 bytes long.
 Data: <(rZ&#165;&#246;           > 28 72 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{300} normal block at 0x000001F6A55A6740, 16 bytes long.
 Data: < rZ&#165;&#246;           > 00 72 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{299} normal block at 0x000001F6A559F360, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{298} normal block at 0x000001F6A55A66A0, 16 bytes long.
 Data: <&#216;qZ&#165;&#246;           > D8 71 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{297} normal block at 0x000001F6A55A6600, 16 bytes long.
 Data: <&#176;qZ&#165;&#246;           > B0 71 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x000001F6A55A6650, 16 bytes long.
 Data: < qZ&#165;&#246;           > 88 71 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x000001F6A55A5D90, 16 bytes long.
 Data: <`qZ&#165;&#246;           > 60 71 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x000001F6A55A0460, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{293} normal block at 0x000001F6A55A62E0, 16 bytes long.
 Data: <(\Z&#165;&#246;           > 28 5C 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x000001F6A559E940, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{291} normal block at 0x000001F6A55A5E30, 16 bytes long.
 Data: < \Z&#165;&#246;           > 00 5C 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x000001F6A55A69C0, 16 bytes long.
 Data: <&#216;[Z&#165;&#246;           > D8 5B 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000001F6A55A5DE0, 16 bytes long.
 Data: <&#176;[Z&#165;&#246;           > B0 5B 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x000001F6A55A6290, 16 bytes long.
 Data: < [Z&#165;&#246;           > 88 5B 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x000001F6A55A67E0, 16 bytes long.
 Data: <`[Z&#165;&#246;           > 60 5B 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x000001F6A55A5F20, 16 bytes long.
 Data: <8[Z&#165;&#246;           > 38 5B 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x000001F6A559E820, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{283} normal block at 0x000001F6A55A6240, 16 bytes long.
 Data: < [Z&#165;&#246;           > 10 5B 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000001F6A55A5B10, 320 bytes long.
 Data: <@bZ&#165;&#246;    &#232;Y&#165;&#246;   > 40 62 5A A5 F6 01 00 00 20 E8 59 A5 F6 01 00 00 
{281} normal block at 0x000001F6A55A6BF0, 16 bytes long.
 Data: <@qZ&#165;&#246;           > 40 71 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000001F6A55A6970, 16 bytes long.
 Data: < qZ&#165;&#246;           > 18 71 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000001F6A559E7C0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{278} normal block at 0x000001F6A55A60B0, 16 bytes long.
 Data: <&#240;pZ&#165;&#246;           > F0 70 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x000001F6A559EE80, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{276} normal block at 0x000001F6A55A61F0, 16 bytes long.
 Data: <8pZ&#165;&#246;           > 38 70 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000001F6A55A6510, 16 bytes long.
 Data: < pZ&#165;&#246;           > 10 70 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x000001F6A55A5E80, 16 bytes long.
 Data: <&#232;oZ&#165;&#246;           > E8 6F 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000001F6A55A6380, 16 bytes long.
 Data: <&#192;oZ&#165;&#246;           > C0 6F 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x000001F6A55A6C90, 16 bytes long.
 Data: < oZ&#165;&#246;           > 98 6F 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x000001F6A55A6420, 16 bytes long.
 Data: <poZ&#165;&#246;           > 70 6F 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x000001F6A55A6150, 16 bytes long.
 Data: <@&#254;Y&#165;&#246;           > 40 FE 59 A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x000001F6A559FE40, 40 bytes long.
 Data: <PaZ&#165;&#246;   P &#241;&#166;&#246;   > 50 61 5A A5 F6 01 00 00 50 08 F1 A6 F6 01 00 00 
{267} normal block at 0x000001F6A55A6CE0, 16 bytes long.
 Data: <PoZ&#165;&#246;           > 50 6F 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x000001F6A55A6100, 16 bytes long.
 Data: <(oZ&#165;&#246;           > 28 6F 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000001F6A559F2A0, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{264} normal block at 0x000001F6A55A6060, 16 bytes long.
 Data: < oZ&#165;&#246;           > 00 6F 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x000001F6A55A6F00, 992 bytes long.
 Data: <``Z&#165;&#246;   &#160;&#242;Y&#165;&#246;   > 60 60 5A A5 F6 01 00 00 A0 F2 59 A5 F6 01 00 00 
{99} normal block at 0x000001F6A559EC40, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{98} normal block at 0x000001F6A55999C0, 16 bytes long.
 Data: <  Z&#165;&#246;           > 80 03 5A A5 F6 01 00 00 00 00 00 00 00 00 00 00 
{97} normal block at 0x000001F6A55A0380, 40 bytes long.
 Data: <&#192; Y&#165;&#246;   @&#236;Y&#165;&#246;   > C0 99 59 A5 F6 01 00 00 40 EC 59 A5 F6 01 00 00 
{76} normal block at 0x000001F6A559A0F0, 16 bytes long.
 Data: < &#234;&#185;<&#246;           > 80 EA B9 3C F6 7F 00 00 00 00 00 00 00 00 00 00 
{75} normal block at 0x000001F6A559A050, 16 bytes long.
 Data: <@&#233;&#185;<&#246;           > 40 E9 B9 3C F6 7F 00 00 00 00 00 00 00 00 00 00 
{74} normal block at 0x000001F6A5599AB0, 16 bytes long.
 Data: <&#248;W&#182;<&#246;           > F8 57 B6 3C F6 7F 00 00 00 00 00 00 00 00 00 00 
{73} normal block at 0x000001F6A559A280, 16 bytes long.
 Data: <&#216;W&#182;<&#246;           > D8 57 B6 3C F6 7F 00 00 00 00 00 00 00 00 00 00 
{72} normal block at 0x000001F6A559A140, 16 bytes long.
 Data: <P &#182;<&#246;           > 50 04 B6 3C F6 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x000001F6A5599D80, 16 bytes long.
 Data: <0 &#182;<&#246;           > 30 04 B6 3C F6 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x000001F6A5599D30, 16 bytes long.
 Data: <&#224; &#182;<&#246;           > E0 02 B6 3C F6 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x000001F6A559A0A0, 16 bytes long.
 Data: <  &#182;<&#246;           > 10 04 B6 3C F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000001F6A559A3C0, 16 bytes long.
 Data: <p &#182;<&#246;           > 70 04 B6 3C F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000001F6A55998D0, 16 bytes long.
 Data: < &#192;&#180;<&#246;           > 18 C0 B4 3C F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


©2026 Universitat Pompeu Fabra