Task 38599442

Name p38_A30_A33_r0_3-QUICO_ATM_GAFF2_NAGL_p38-1-6-RND3922_0
Workunit 31554359
Created 8 Apr 2026, 17:54:06 UTC
Sent 8 Apr 2026, 17:54:14 UTC
Report deadline 13 Apr 2026, 17:54:14 UTC
Received 8 Apr 2026, 20:25:23 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 650482
Run time 2 hours 30 min 44 sec
CPU time 2 hours 24 min 54 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 62,982.38 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 736.54 MB
Peak swap size 13.32 GB
Peak disk usage 3.06 GB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
19:55:00 (16548): wrapper (7.9.26016): starting
19:55:00 (16548): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A30_A33_0.pdb
QB_A30_A33_0.xml
QB_A30_A33.inpcrd
QB_A30_A33_input.yaml
QB_A30_A33.pdb
QB_A30_A33.prmtop
QB_A30_A33_sys.xml
run.bat
run.sh
19:55:01 (16548): Library/usr/bin/tar.exe exited; CPU time 0.000000
19:55:01 (16548): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\31\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\31\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
22:25:05 (16548): C:/Windows/system32/cmd.exe exited; CPU time 8694.140625
22:25:05 (16548): called boinc_finish(0)
0 bytes in 0 Free Blocks.
460 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 136650959 bytes.
Dumping objects ->
{3835629} normal block at 0x00000244A7E061E0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835618} normal block at 0x00000244A7E06640, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835607} normal block at 0x00000244A7E065D0, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835596} normal block at 0x00000244A7E06870, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835585} normal block at 0x00000244A7E06800, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835554} normal block at 0x00000244A9B957B0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835543} normal block at 0x00000244A9BADFD0, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835540} normal block at 0x00000244A7DFD3F0, 8 bytes long.
 Data: <  &#218;&#167;D   > 00 00 DA A7 44 02 00 00 
{3834716} normal block at 0x00000244A9BAE550, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833955} normal block at 0x00000244A7DFD210, 8 bytes long.
 Data: < &#234;&#237;&#167;D   > 80 EA ED A7 44 02 00 00 
..\zip\boinc_zip.cpp(122) : {309} normal block at 0x00000244A7DF0EC0, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x00000244A7DF1D20, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{293} normal block at 0x00000244A7E04990, 16 bytes long.
 Data: <(`&#224;&#167;D           > 28 60 E0 A7 44 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x00000244A7E04E90, 16 bytes long.
 Data: < `&#224;&#167;D           > 00 60 E0 A7 44 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x00000244A7E00660, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{290} normal block at 0x00000244A7E05200, 16 bytes long.
 Data: <&#216;_&#224;&#167;D           > D8 5F E0 A7 44 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x00000244A7E04C10, 16 bytes long.
 Data: <&#176;_&#224;&#167;D           > B0 5F E0 A7 44 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x00000244A7E05840, 16 bytes long.
 Data: < _&#224;&#167;D           > 88 5F E0 A7 44 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x00000244A7E05070, 16 bytes long.
 Data: <`_&#224;&#167;D           > 60 5F E0 A7 44 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x00000244A7E06560, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{285} normal block at 0x00000244A7E05020, 16 bytes long.
 Data: <H&#250;&#222;&#167;D           > 48 FA DE A7 44 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x00000244A7E00780, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{283} normal block at 0x00000244A7E057F0, 16 bytes long.
 Data: < &#250;&#222;&#167;D           > 20 FA DE A7 44 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x00000244A7E04BC0, 16 bytes long.
 Data: <&#248;&#249;&#222;&#167;D           > F8 F9 DE A7 44 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x00000244A7E05160, 16 bytes long.
 Data: <&#208;&#249;&#222;&#167;D           > D0 F9 DE A7 44 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x00000244A7E05750, 16 bytes long.
 Data: <&#168;&#249;&#222;&#167;D           > A8 F9 DE A7 44 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x00000244A7E04E40, 16 bytes long.
 Data: < &#249;&#222;&#167;D           > 80 F9 DE A7 44 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x00000244A7E05700, 16 bytes long.
 Data: <X&#249;&#222;&#167;D           > 58 F9 DE A7 44 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x00000244A7E00600, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{275} normal block at 0x00000244A7E05570, 16 bytes long.
 Data: <0&#249;&#222;&#167;D           > 30 F9 DE A7 44 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x00000244A7DEF930, 320 bytes long.
 Data: <pU&#224;&#167;D     &#224;&#167;D   > 70 55 E0 A7 44 02 00 00 00 06 E0 A7 44 02 00 00 
{273} normal block at 0x00000244A7E055C0, 16 bytes long.
 Data: <@_&#224;&#167;D           > 40 5F E0 A7 44 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x00000244A7E04AD0, 16 bytes long.
 Data: < _&#224;&#167;D           > 18 5F E0 A7 44 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x00000244A7E00840, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{270} normal block at 0x00000244A7E04D50, 16 bytes long.
 Data: <&#240;^&#224;&#167;D           > F0 5E E0 A7 44 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x00000244A7E00BA0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{268} normal block at 0x00000244A7E04A30, 16 bytes long.
 Data: <8^&#224;&#167;D           > 38 5E E0 A7 44 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x00000244A7E04DA0, 16 bytes long.
 Data: < ^&#224;&#167;D           > 10 5E E0 A7 44 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x00000244A7E04FD0, 16 bytes long.
 Data: <&#232;]&#224;&#167;D           > E8 5D E0 A7 44 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x00000244A7E04D00, 16 bytes long.
 Data: <&#192;]&#224;&#167;D           > C0 5D E0 A7 44 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x00000244A7E04F30, 16 bytes long.
 Data: < ]&#224;&#167;D           > 98 5D E0 A7 44 02 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x00000244A7E05340, 16 bytes long.
 Data: <p]&#224;&#167;D           > 70 5D E0 A7 44 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x00000244A7E04B70, 16 bytes long.
 Data: <&#176;&#199;&#222;&#167;D           > B0 C7 DE A7 44 02 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x00000244A7DEC7B0, 40 bytes long.
 Data: <pK&#224;&#167;D   &#176;W&#185;&#169;D   > 70 4B E0 A7 44 02 00 00 B0 57 B9 A9 44 02 00 00 
{259} normal block at 0x00000244A7E053E0, 16 bytes long.
 Data: <P]&#224;&#167;D           > 50 5D E0 A7 44 02 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x00000244A7E05610, 16 bytes long.
 Data: <(]&#224;&#167;D           > 28 5D E0 A7 44 02 00 00 00 00 00 00 00 00 00 00 
{257} normal block at 0x00000244A7E00C60, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{256} normal block at 0x00000244A7E054D0, 16 bytes long.
 Data: < ]&#224;&#167;D           > 00 5D E0 A7 44 02 00 00 00 00 00 00 00 00 00 00 
{255} normal block at 0x00000244A7E05D00, 992 bytes long.
 Data: <&#208;T&#224;&#167;D   ` &#224;&#167;D   > D0 54 E0 A7 44 02 00 00 60 0C E0 A7 44 02 00 00 
{91} normal block at 0x00000244A7E010E0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{90} normal block at 0x00000244A7DFD350, 16 bytes long.
 Data: <P&#178;&#222;&#167;D           > 50 B2 DE A7 44 02 00 00 00 00 00 00 00 00 00 00 
{89} normal block at 0x00000244A7DEB250, 40 bytes long.
 Data: <P&#211;&#223;&#167;D   &#224; &#224;&#167;D   > 50 D3 DF A7 44 02 00 00 E0 10 E0 A7 44 02 00 00 
{68} normal block at 0x00000244A7DFD030, 16 bytes long.
 Data: < &#234; K&#246;           > 80 EA 20 4B F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x00000244A7DFDCB0, 16 bytes long.
 Data: <@&#233; K&#246;           > 40 E9 20 4B F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x00000244A7DFCFE0, 16 bytes long.
 Data: <&#248;W K&#246;           > F8 57 1D 4B F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x00000244A7DFCF90, 16 bytes long.
 Data: <&#216;W K&#246;           > D8 57 1D 4B F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x00000244A7DFCF40, 16 bytes long.
 Data: <P  K&#246;           > 50 04 1D 4B F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x00000244A7DFDC60, 16 bytes long.
 Data: <0  K&#246;           > 30 04 1D 4B F6 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x00000244A7DFD490, 16 bytes long.
 Data: <&#224;  K&#246;           > E0 02 1D 4B F6 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x00000244A7DFD8F0, 16 bytes long.
 Data: <   K&#246;           > 10 04 1D 4B F6 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x00000244A7DFD670, 16 bytes long.
 Data: <p  K&#246;           > 70 04 1D 4B F6 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x00000244A7DFD300, 16 bytes long.
 Data: < &#192; K&#246;           > 18 C0 1B 4B F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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