Task 38598540
| Name | MCL1_A26_A35_r0_5-QUICO_ATM_GAFF2_NAGL_MCL1-1-6-RND6934_2 |
| Workunit | 31553684 |
| Created | 8 Apr 2026, 10:15:17 UTC |
| Sent | 8 Apr 2026, 10:15:22 UTC |
| Report deadline | 13 Apr 2026, 10:15:22 UTC |
| Received | 8 Apr 2026, 13:50:38 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
| Computer ID | 640525 |
| Run time | 1 hours 32 min 33 sec |
| CPU time | 1 hours 32 min 33 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 29,684.05 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 471.93 MB |
| Peak swap size | 9.55 GB |
| Peak disk usage | 2.90 GB |
Stderr output
<core_client_version>8.2.4</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
(0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
08:16:58 (24508): wrapper (7.9.26016): starting
08:16:58 (24508): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A26_A35_0.pdb
QB_A26_A35_0.xml
QB_A26_A35.inpcrd
QB_A26_A35_input.yaml
QB_A26_A35.pdb
QB_A26_A35.prmtop
QB_A26_A35_sys.xml
run.bat
run.sh
08:16:59 (24508): Library/usr/bin/tar.exe exited; CPU time 0.000000
08:16:59 (24508): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "C:\ProgramData\BOINC\slots\0\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
rx.scheduleJobs()
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
self.transport.ProcessJobQueue(min_time,cycle_time)
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
self.isDone(repl,0)
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
retcode = self._update_replica(job)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 212, in _update_replica
pot = job['openmm_worker'].get_energy()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\ommworker.py", line 451, in get_energy
return self._worker_getenergy()
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\ommworker.py", line 400, in _worker_getenergy
state = self.simulation.context.getState(getEnergy = True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\openmm\openmm.py", line 5022, in getState
state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Particle coordinate is NaN. For more information, see https://github.com/openmm/openmm/wiki/Frequently-Asked-Questions#nan
09:48:49 (24508): C:/Windows/system32/cmd.exe exited; CPU time 5553.375000
09:48:49 (24508): app exit status: 0x16
09:48:49 (24508): called boinc_finish(195)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 93550699 bytes.
Dumping objects ->
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{3835175} normal block at 0x000001CFE8179450, 48 bytes long.
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Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835153} normal block at 0x000001CFE8150A60, 48 bytes long.
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Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
..\api\boinc_api.cpp(309) : {3835109} normal block at 0x000001CFE814D7D0, 8 bytes long.
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..\zip\boinc_zip.cpp(122) : {311} normal block at 0x000001CFE81413F0, 260 bytes long.
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{278} normal block at 0x000001CFE81516D0, 32 bytes long.
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{277} normal block at 0x000001CFE8155CE0, 16 bytes long.
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{259} normal block at 0x000001CFE8151310, 32 bytes long.
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{93} normal block at 0x000001CFE81512B0, 32 bytes long.
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{92} normal block at 0x000001CFE814D640, 16 bytes long.
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Data: <@Ö èÏ ° èÏ > 40 D6 14 E8 CF 01 00 00 B0 12 15 E8 CF 01 00 00
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{67} normal block at 0x000001CFE814DD70, 16 bytes long.
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{66} normal block at 0x000001CFE814D550, 16 bytes long.
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{64} normal block at 0x000001CFE814D370, 16 bytes long.
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{63} normal block at 0x000001CFE814D4B0, 16 bytes long.
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{62} normal block at 0x000001CFE814D690, 16 bytes long.
Data: <p ö > 70 04 88 05 F6 7F 00 00 00 00 00 00 00 00 00 00
{61} normal block at 0x000001CFE814D730, 16 bytes long.
Data: < À† ö > 18 C0 86 05 F6 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
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