Task 38596198
| Name | TYK2_A06_A01_r0_3-QUICO_ATM_OFF23_NAGL_TYK2-0-4-RND9514_1 |
| Workunit | 31552138 |
| Created | 24 Mar 2026, 11:12:18 UTC |
| Sent | 24 Mar 2026, 11:12:25 UTC |
| Report deadline | 29 Mar 2026, 11:12:25 UTC |
| Received | 24 Mar 2026, 11:15:51 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
| Computer ID | 643002 |
| Run time | 1 min 5 sec |
| CPU time | 17 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 19,179.66 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 554.29 MB |
| Peak swap size | 12.60 GB |
| Peak disk usage | 2.78 GB |
Stderr output
<core_client_version>8.2.8</core_client_version>
<![CDATA[
<message>
Det g�r inte att k�ra (null).
(0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
12:14:49 (27756): wrapper (7.9.26016): starting
12:14:49 (27756): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A06_A01_0.pdb
QB_A06_A01_0.xml
QB_A06_A01.inpcrd
QB_A06_A01_input.yaml
QB_A06_A01.pdb
QB_A06_A01.prmtop
QB_A06_A01_sys.xml
run.bat
run.sh
12:14:50 (27756): Library/usr/bin/tar.exe exited; CPU time 0.000000
12:14:50 (27756): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "C:\ProgramData\BOINC\slots\1\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
rx.scheduleJobs()
File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
self.transport.ProcessJobQueue(min_time,cycle_time)
File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
self.isDone(repl,0)
File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
retcode = self._update_replica(job)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 212, in _update_replica
pot = job['openmm_worker'].get_energy()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\ommworker.py", line 451, in get_energy
return self._worker_getenergy()
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\ommworker.py", line 400, in _worker_getenergy
state = self.simulation.context.getState(getEnergy = True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\openmm\openmm.py", line 5022, in getState
state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Particle coordinate is NaN. For more information, see https://github.com/openmm/openmm/wiki/Frequently-Asked-Questions#nan
12:15:26 (27756): C:/Windows/system32/cmd.exe exited; CPU time 17.140625
12:15:26 (27756): app exit status: 0x16
12:15:26 (27756): called boinc_finish(195)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 909033 bytes.
Dumping objects ->
{3835431} normal block at 0x00000148C7C90840, 48 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835420} normal block at 0x00000148C7C90A00, 48 bytes long.
Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835409} normal block at 0x00000148C7C91090, 48 bytes long.
Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61
{3835398} normal block at 0x00000148C7C91480, 48 bytes long.
Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835387} normal block at 0x00000148C7C90B50, 48 bytes long.
Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61
{3835356} normal block at 0x00000148C7D92A80, 64 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
..\api\boinc_api.cpp(309) : {3835343} normal block at 0x00000148C60AF3A0, 8 bytes long.
Data: < ÆH > 00 00 03 C6 48 01 00 00
{3833961} normal block at 0x00000148C60AF990, 8 bytes long.
Data: < ÞÇH > 20 1E DE C7 48 01 00 00
..\zip\boinc_zip.cpp(122) : {312} normal block at 0x00000148C609DE90, 260 bytes long.
Data: < > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
{297} normal block at 0x00000148C6099610, 80 bytes long.
Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C
{296} normal block at 0x00000148C60AF2B0, 16 bytes long.
Data: <H– ÆH > 48 96 0A C6 48 01 00 00 00 00 00 00 00 00 00 00
{295} normal block at 0x00000148C60AF440, 16 bytes long.
Data: < – ÆH > 20 96 0A C6 48 01 00 00 00 00 00 00 00 00 00 00
{294} normal block at 0x00000148C60AB010, 32 bytes long.
Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D
{293} normal block at 0x00000148C60AF5D0, 16 bytes long.
Data: <ø• ÆH > F8 95 0A C6 48 01 00 00 00 00 00 00 00 00 00 00
{292} normal block at 0x00000148C60AF170, 16 bytes long.
Data: <Е ÆH > D0 95 0A C6 48 01 00 00 00 00 00 00 00 00 00 00
{291} normal block at 0x00000148C60AFDF0, 16 bytes long.
Data: <¨• ÆH > A8 95 0A C6 48 01 00 00 00 00 00 00 00 00 00 00
{290} normal block at 0x00000148C60AF7B0, 16 bytes long.
Data: < • ÆH > 80 95 0A C6 48 01 00 00 00 00 00 00 00 00 00 00
{289} normal block at 0x00000148C60AA6F0, 48 bytes long.
Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F
{288} normal block at 0x00000148C60AFDA0, 16 bytes long.
Data: <X‡ ÆH > 58 87 09 C6 48 01 00 00 00 00 00 00 00 00 00 00
{287} normal block at 0x00000148C60AAF50, 32 bytes long.
Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69
{286} normal block at 0x00000148C60AF8F0, 16 bytes long.
Data: <0‡ ÆH > 30 87 09 C6 48 01 00 00 00 00 00 00 00 00 00 00
{284} normal block at 0x00000148C60AEFE0, 16 bytes long.
Data: < ‡ ÆH > 08 87 09 C6 48 01 00 00 00 00 00 00 00 00 00 00
{283} normal block at 0x00000148C60AEF40, 16 bytes long.
Data: <à† ÆH > E0 86 09 C6 48 01 00 00 00 00 00 00 00 00 00 00
{282} normal block at 0x00000148C60AFD50, 16 bytes long.
Data: <¸† ÆH > B8 86 09 C6 48 01 00 00 00 00 00 00 00 00 00 00
{281} normal block at 0x00000148C60AFA80, 16 bytes long.
Data: < † ÆH > 90 86 09 C6 48 01 00 00 00 00 00 00 00 00 00 00
{280} normal block at 0x00000148C60AEEF0, 16 bytes long.
Data: <h† ÆH > 68 86 09 C6 48 01 00 00 00 00 00 00 00 00 00 00
{279} normal block at 0x00000148C60AAE30, 32 bytes long.
Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55
{278} normal block at 0x00000148C60AF350, 16 bytes long.
Data: <@† ÆH > 40 86 09 C6 48 01 00 00 00 00 00 00 00 00 00 00
{277} normal block at 0x00000148C6098640, 320 bytes long.
Data: <Pó ÆH 0® ÆH > 50 F3 0A C6 48 01 00 00 30 AE 0A C6 48 01 00 00
{276} normal block at 0x00000148C60AF9E0, 16 bytes long.
Data: <`• ÆH > 60 95 0A C6 48 01 00 00 00 00 00 00 00 00 00 00
{275} normal block at 0x00000148C60AF6C0, 16 bytes long.
Data: <8• ÆH > 38 95 0A C6 48 01 00 00 00 00 00 00 00 00 00 00
{274} normal block at 0x00000148C60AAC50, 32 bytes long.
Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65
{273} normal block at 0x00000148C60AF670, 16 bytes long.
Data: < • ÆH > 10 95 0A C6 48 01 00 00 00 00 00 00 00 00 00 00
{272} normal block at 0x00000148C60AB490, 32 bytes long.
Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62
{271} normal block at 0x00000148C60AFD00, 16 bytes long.
Data: <X” ÆH > 58 94 0A C6 48 01 00 00 00 00 00 00 00 00 00 00
{270} normal block at 0x00000148C60AFC60, 16 bytes long.
Data: <0” ÆH > 30 94 0A C6 48 01 00 00 00 00 00 00 00 00 00 00
{269} normal block at 0x00000148C60AF080, 16 bytes long.
Data: < ” ÆH > 08 94 0A C6 48 01 00 00 00 00 00 00 00 00 00 00
{268} normal block at 0x00000148C60AF210, 16 bytes long.
Data: <à“ ÆH > E0 93 0A C6 48 01 00 00 00 00 00 00 00 00 00 00
{267} normal block at 0x00000148C60AFCB0, 16 bytes long.
Data: <¸“ ÆH > B8 93 0A C6 48 01 00 00 00 00 00 00 00 00 00 00
{266} normal block at 0x00000148C60AFBC0, 16 bytes long.
Data: < “ ÆH > 90 93 0A C6 48 01 00 00 00 00 00 00 00 00 00 00
{264} normal block at 0x00000148C60AF850, 16 bytes long.
Data: <À¤ ÆH > C0 A4 0A C6 48 01 00 00 00 00 00 00 00 00 00 00
{263} normal block at 0x00000148C60AA4C0, 40 bytes long.
Data: <Pø ÆH *ÙÇH > 50 F8 0A C6 48 01 00 00 80 2A D9 C7 48 01 00 00
{262} normal block at 0x00000148C60AFB70, 16 bytes long.
Data: <p“ ÆH > 70 93 0A C6 48 01 00 00 00 00 00 00 00 00 00 00
{261} normal block at 0x00000148C60AF530, 16 bytes long.
Data: <H“ ÆH > 48 93 0A C6 48 01 00 00 00 00 00 00 00 00 00 00
{260} normal block at 0x00000148C60AB3D0, 32 bytes long.
Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F
{259} normal block at 0x00000148C60AFB20, 16 bytes long.
Data: < “ ÆH > 20 93 0A C6 48 01 00 00 00 00 00 00 00 00 00 00
{258} normal block at 0x00000148C60A9320, 992 bytes long.
Data: < û ÆH г ÆH > 20 FB 0A C6 48 01 00 00 D0 B3 0A C6 48 01 00 00
{94} normal block at 0x00000148C60AB1F0, 32 bytes long.
Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F
{93} normal block at 0x00000148C609B5B0, 16 bytes long.
Data: <P¤ ÆH > 50 A4 0A C6 48 01 00 00 00 00 00 00 00 00 00 00
{92} normal block at 0x00000148C60AA450, 40 bytes long.
Data: <°µ ÆH ð± ÆH > B0 B5 09 C6 48 01 00 00 F0 B1 0A C6 48 01 00 00
{71} normal block at 0x00000148C609B560, 16 bytes long.
Data: < êÖ£÷ > 80 EA D6 A3 F7 7F 00 00 00 00 00 00 00 00 00 00
{70} normal block at 0x00000148C609BCE0, 16 bytes long.
Data: <@éÖ£÷ > 40 E9 D6 A3 F7 7F 00 00 00 00 00 00 00 00 00 00
{69} normal block at 0x00000148C609BFB0, 16 bytes long.
Data: <øWÓ£÷ > F8 57 D3 A3 F7 7F 00 00 00 00 00 00 00 00 00 00
{68} normal block at 0x00000148C609BBF0, 16 bytes long.
Data: <ØWÓ£÷ > D8 57 D3 A3 F7 7F 00 00 00 00 00 00 00 00 00 00
{67} normal block at 0x00000148C609BF60, 16 bytes long.
Data: <P Ó£÷ > 50 04 D3 A3 F7 7F 00 00 00 00 00 00 00 00 00 00
{66} normal block at 0x00000148C609BC90, 16 bytes long.
Data: <0 Ó£÷ > 30 04 D3 A3 F7 7F 00 00 00 00 00 00 00 00 00 00
{65} normal block at 0x00000148C609B9C0, 16 bytes long.
Data: <à Ó£÷ > E0 02 D3 A3 F7 7F 00 00 00 00 00 00 00 00 00 00
{64} normal block at 0x00000148C609BEC0, 16 bytes long.
Data: < Ó£÷ > 10 04 D3 A3 F7 7F 00 00 00 00 00 00 00 00 00 00
{63} normal block at 0x00000148C609C3C0, 16 bytes long.
Data: <p Ó£÷ > 70 04 D3 A3 F7 7F 00 00 00 00 00 00 00 00 00 00
{62} normal block at 0x00000148C609C320, 16 bytes long.
Data: < ÀÑ£÷ > 18 C0 D1 A3 F7 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
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