1) Message boards : News : New CPU Application for testing (Message 37488)
Posted 3530 days ago by Dr Who Fan
Just aborted a V845 that has been been at 100% complete forever...
According to BOINC it was 4,706.000% DONE

Application Test application for CPU MD 8.45 (mt)
Workunit name 6_745-MJHARVEY_gpugrid10z4-0-1-RND3120
State Waiting to run
Received 28-07-2014 16:10
Report deadline 02-08-2014 16:08
Estimated app speed 3.82 GFLOPs/sec
Estimated task size 5,000,000 GFLOPs
Resources 2 CPUs
CPU time at last checkpoint 00:00:00
CPU time 21:05:58
Elapsed time 13:59:25
Estimated time remaining 00:00:00
Fraction done 4,706.000%
Virtual memory size 49.34 MB
Working set size 0.35 MB
Directory slots/5
Process ID 5716

2) Message boards : Number crunching : MULTISCALELAB_MJHARVEY Output file absent/Error 193 (Message 37139)
Posted 3566 days ago by Dr Who Fan
Got another one today with same error message. Task was running on Android OS/NEXUS 7 tablet.

GPUGRID 23-06-2014 18:14 Output file 9473-DOCK_MULTISCALELAB_MJHARVEY_671_WT_ZINC104-0-1-RND6560_0_0 for task 9473-DOCK_MULTISCALELAB_MJHARVEY_671_WT_ZINC104-0-1-RND6560_0 absent


Name 9473-DOCK_MULTISCALELAB_MJHARVEY_671_WT_ZINC104-0-1-RND6560_0
Workunit 9650476

ILE : [out] [ligand-39518.pdbqt]
[ligand-39519.pdbqt]
NEXTFILE : [out] [ligand-39519.pdbqt]
[ligand-3951.pdbqt]
NEXTFILE : [out] [ligand-3951.pdbqt]
[ligand-39520.pdbqt]
NEXTFILE : [out] [ligand-39520.pdbqt]
copy [in/ligand-39520.pdbqt]->[ligand.pdbqt]
# (BOINC) Mapping [input.dat]->[input.dat]
# (BOINC) Mapping [progress.log]->[progress.log]
# (BOINC) Mapping [protein.pdbqt]->[protein.pdbqt]
# (BOINC) Mapping [ligand.pdbqt]->[ligand.pdbqt]
# (BOINC) Mapping [out.pdbqt]->[out.pdbqt]
copy [out.pdbqt]->[out/ligand-39520.pdbqt]
nextfile: reading [in]
[.]
[..]
[ligand-39517.pdbqt]
NEXTFILE : [out] [ligand-39517.pdbqt]
[ligand-39518.pdbqt]
NEXTFILE : [out] [ligand-39518.pdbqt]
[ligand-39519.pdbqt]
NEXTFILE : [out] [ligand-39519.pdbqt]
[ligand-3951.pdbqt]
NEXTFILE : [out] [ligand-3951.pdbqt]
[ligand-39520.pdbqt]
NEXTFILE : [out] [ligand-39520.pdbqt]
[ligand-39521.pdbqt]
NEXTFILE : [out] [ligand-39521.pdbqt]
copy [in/ligand-39521.pdbqt]->[ligand.pdbqt]
# (BOINC) Mapping [input.dat]->[input.dat]
# (BOINC) Mapping [progress.log]->[progress.log]
# (BOINC) Mapping [protein.pdbqt]->[protein.pdbqt]
# (BOINC) Mapping [ligand.pdbqt]->[ligand.pdbqt]
SIGSEGV: segmentation violation

Exiting...

</stderr_txt>
]]>
3) Message boards : Number crunching : MULTISCALELAB_MJHARVEY Output file absent/Error 193 (Message 37077)
Posted 3571 days ago by Dr Who Fan
Task# 12214305 Ended with Exit status 193 (0xc1) EXIT_SIGNAL

Found this in the Detailed Message
GPUGRID 6/19/2014 12:35:20 AM Output file 8155-DOCK_MULTISCALELAB_MJHARVEY_647_WT_ZINC80-0-1-RND0754_0_0 for task 8155-DOCK_MULTISCALELAB_MJHARVEY_647_WT_ZINC80-0-1-RND0754_0 absent


Stderr output
<core_client_version>7.0.36</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>
<stderr_txt>
stackdumps unavailable
# (BOINC) Mapping [ligand.tar]->[ligand.tar]
# (BOINC) Mapping [results.tar]->[../../projects/www.gpugrid.net/8155-DOCK_MULTISCALELAB_MJHARVEY_647_WT_ZINC80-0-1-RND0754_0_0]
# (BOINC) Mapping [protein.pdbqt]->[protein.pdbqt]
# (BOINC) Mapping [flexible.pdbqt]->[flexible.pdbqt]
nextfile: reading [in]
[.]
[..]
[ligand-28909.pdbqt]
NEXTFILE : [out] [ligand-28909.pdbqt]
copy [in/ligand-28909.pdbqt]->[ligand.pdbqt]
# (BOINC) Mapping [input.dat]->[input.dat]
# (BOINC) Mapping [progress.log]->[progress.log]
# (BOINC) Mapping [protein.pdbqt]->[protein.pdbqt]
# (BOINC) Mapping [ligand.pdbqt]->[ligand.pdbqt]
# (BOINC) Mapping [out.pdbqt]->[out.pdbqt]
copy [out.pdbqt]->[out/ligand-28909.pdbqt]
nextfile: reading [in]
[.]
[..]
[ligand-28909.pdbqt]
NEXTFILE : [out] [ligand-28909.pdbqt]
[ligand-2890.pdbqt]
NEXTFILE : [out] [ligand-2890.pdbqt]
copy [in/ligand-2890.pdbqt]->[ligand.pdbqt]
# (BOINC) Mapping [input.dat]->[input.dat]
# (BOINC) Mapping [progress.log]->[progress.log]
# (BOINC) Mapping [protein.pdbqt]->[protein.pdbqt]
# (BOINC) Mapping [ligand.pdbqt]->[ligand.pdbqt]
# (BOINC) Mapping [out.pdbqt]->[out.pdbqt]
copy [out.pdbqt]->[out/ligand-2890.pdbqt]
nextfile: reading [in]
[.]
[..]
[ligand-28909.pdbqt]
NEXTFILE : [out] [ligand-28909.pdbqt]
[ligand-2890.pdbqt]
NEXTFILE : [out] [ligand-2890.pdbqt]
[ligand-28910.pdbqt]
NEXTFILE : [out] [ligand-28910.pdbqt]
copy [in/ligand-28910.pdbqt]->[ligand.pdbqt]
# (BOINC) Mapping [input.dat]->[input.dat]
# (BOINC) Mapping [progress.log]->[progress.log]
# (BOINC) Mapping [protein.pdbqt]->[protein.pdbqt]
# (BOINC) Mapping [ligand.pdbqt]->[ligand.pdbqt]
SIGSEGV: segmentation violation

Exiting...

</stderr_txt>
]]>
4) Message boards : Number crunching : CPU only app v1.05 (Message 35909)
Posted 3655 days ago by Dr Who Fan
Getting nothing but errors upon starting of v1.05 tasks on BOTH Windows & Android.
Tasks are erroring out for ALL who have attempted to run them.

One example of error message that is common to BOTH types:
Stderr output
<core_client_version>7.0.64</core_client_version>
<![CDATA[
<message>
Incorrect function.
(0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# (BOINC) Mapping [ligand.tar]->[ligand.tar]
# (BOINC) Mapping [results.tar]->[../../projects/www.gpugrid.net/DECOY405-MJHARVEY_DUDMYREC2-0-1-RND5157_6_0]
# (BOINC) Mapping [protein.pdbqt]->[protein.pdbqt]
# (BOINC) Mapping [flexible.pdbqt]->[flexible.pdbqt]
nextfile: reading [in]
[.]
[..]
[decoy-405.pdbqt]
NEXTFILE : [out] [decoy-405.pdbqt]
copy [in/decoy-405.pdbqt]->[ligand.pdbqt]
# (BOINC) Mapping [input.dat]->[input.dat]
# (BOINC) Mapping [progress.log]->[progress.log]
# (BOINC) Mapping [protein.pdbqt]->[protein.pdbqt]


Parse error on line 1 in file "protein.pdbqt": ATOM syntax incorrect: "9.00 -17.40" is not a valid AutoDock type. Note that AutoDock atom types are case-sensitive.
08:00:21 (2160): called boinc_finish

</stderr_txt>
]]>


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