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Stefan
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Message 38817 - Posted: 5 Nov 2014 | 13:50:55 UTC
Last modified: 6 Nov 2014 | 9:59:09 UTC

Hey all,
I am starting some new simulations whose names begin with ubi. They are relatively few so you might not notice them much around.
Essentially, after some success in folding the NTL9 protein (see previous WU posts) with a new method I was testing, I wanted to scale it up to a bigger, slower-folding (and more famous) protein and see how my method works on it. So here we go with Ubiquitin.
If this one is also kind enough to fold fast for me, we might be onto something quite useful :)


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Message 38830 - Posted: 5 Nov 2014 | 23:04:46 UTC - in response to Message 38817.

Hello Stefan,

I love to run these for you, but they give an error, on Win7 and 8 at least.
Have a look:
http://www.gpugrid.net/workunit.php?wuid=10259554.
I guess you have to make a small adjustment.

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Message 38832 - Posted: 5 Nov 2014 | 23:17:09 UTC - in response to Message 38830.
Last modified: 5 Nov 2014 | 23:19:12 UTC

I love to run these for you, but they give an error...

My first one crashed, too (Workunit 10259562). Stderr output includes "ERROR: file pme.cpp line 91: PME NX too small".
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Message 38837 - Posted: 6 Nov 2014 | 0:20:49 UTC

Same here.

Stderr output
<core_client_version>7.2.42</core_client_version>
<![CDATA[
<message>
(unknown error) - exit code -98 (0xffffff9e)
</message>
<stderr_txt>
# GPU [GeForce GTX 690] Platform [Windows] Rev [3212] VERSION [65]
# SWAN Device 1 :
# Name : GeForce GTX 690
# ECC : Disabled
# Global mem : 2048MB
# Capability : 3.0
# PCI ID : 0000:04:00.0
# Device clock : 1019MHz
# Memory clock : 3004MHz
# Memory width : 256bit
# Driver version : r343_98 : 34411
ERROR: file pme.cpp line 91: PME NX too small
11:27:04 (6320): called boinc_finish

</stderr_txt>
]]>



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Message 38842 - Posted: 6 Nov 2014 | 5:12:12 UTC

same here

<core_client_version>7.2.42</core_client_version>
<![CDATA[
<message>
process exited with code 158 (0x9e, -98)
</message>
<stderr_txt>
# SWAN Device 0 :
# Name : GeForce GTX 750 Ti
# ECC : Disabled
# Global mem : 2047MB
# Capability : 5.0
# PCI ID : 0000:03:00.0
# Device clock : 1254MHz
# Memory clock : 2700MHz
# Memory width : 128bit
ERROR: file mdsim.cpp line 1005: Invalid celldimension
05:04:26 (2962): called boinc_finish

</stderr_txt>
]]>

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Message 38848 - Posted: 6 Nov 2014 | 9:37:24 UTC

Thank you very much for the timely info!
I'm gonna cancel them and see what's wrong. They seemed to run fine localy.

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Message 38850 - Posted: 6 Nov 2014 | 9:56:34 UTC

Okay, during the submission I accidentally misplaced the cell dimensions file. I resent them now as ubievss2_{1,2,3} so tell me if you see anything weird.

Thanks!

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Message 38853 - Posted: 6 Nov 2014 | 12:02:33 UTC - in response to Message 38850.


I downloaded one of these new units, ("ubievss2"). It is running well, so far. It will be a few hours before it finishes.



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